CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21091	Soybean	cytosol	87.01	86.56
CDX78848	Canola	cytosol	21.04	83.51
Solyc02g070480.2.1	Tomato	cytosol	39.22	78.65
CDY33458	Canola	cytosol	68.31	73.06
CDX77641	Canola	cytosol	68.31	72.65
VIT_10s0003g03880.t01	Wine grape	cytosol	74.55	71.93
Bra025034.1-P	Field mustard	cytosol	69.09	71.12
CDX87738	Canola	cytosol	68.83	71.05
AT5G46170.1	Thale cress	cytosol, plastid	72.47	70.63
CDX99890	Canola	cytosol, golgi, nucleus	67.27	70.57
Bra022022.1-P	Field mustard	cytosol	67.79	70.35
Bra013303.1-P	Field mustard	cytosol	68.83	70.29
PGSC0003DMT400054525	Potato	cytosol	66.75	70.03
CDY43956	Canola	cytosol	67.53	69.71
AT4G18380.1	Thale cress	cytosol	68.31	69.21
CDY26286	Canola	cytosol, nucleus, vacuole	66.49	68.45
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	66.49	68.45
AT1G30200.2	Thale cress	cytosol	66.23	67.28
PGSC0003DMT400049024	Potato	cytosol	66.75	66.07
Solyc08g048430.2.1	Tomato	cytosol	52.21	61.66
GSMUA_Achr4P22940_001	Banana	cytosol	58.96	60.86
GSMUA_Achr7P07910_001	Banana	cytosol	60.0	60.31
GSMUA_Achr4P31500_001	Banana	cytosol	51.95	60.06
GSMUA_Achr2P17340_001	Banana	cytosol	54.55	58.99
GSMUA_Achr5P02540_001	Banana	cytosol	50.39	57.91
Os01t0770400-01	Rice	cytosol	58.18	56.57
Os05t0510400-02	Rice	cytosol	60.0	56.07
TraesCS3A01G296700.1	Wheat	cytosol	57.66	55.36
GSMUA_Achr11P...	Banana	extracellular	10.91	55.26
TraesCS3B01G340400.1	Wheat	cytosol	57.66	55.22
TraesCS3D01G306000.1	Wheat	cytosol	57.4	55.11
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	59.74	54.63
TraesCS1B01G342700.1	Wheat	cytosol	58.7	54.46
Zm00001d000314_P001	Maize	cytosol	57.66	53.88
TraesCS1D01G331400.1	Wheat	cytosol	59.74	53.86
KXG22318	Sorghum	cytosol	58.96	53.41
Zm00001d010705_P001	Maize	cytosol	57.14	53.4
Zm00001d043324_P001	Maize	cytosol	55.32	53.12
OQU78753	Sorghum	cytosol	50.65	52.56
Zm00001d012644_P001	Maize	cytosol	54.81	51.46
EES03683	Sorghum	cytosol	54.55	50.24
EES01093	Sorghum	cytosol	54.03	49.76
GSMUA_Achr7P01170_001	Banana	mitochondrion	51.69	48.66
HORVU1Hr1G077600.2	Barley	plastid	58.7	46.41
HORVU3Hr1G075050.2	Barley	plastid	57.66	46.35
GSMUA_Achr10P...	Banana	cytosol	31.95	42.71
PGSC0003DMT400002031	Potato	extracellular	14.55	35.0
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	12.47	30.0
Zm00001d006500_P001	Maize	cytosol	26.75	25.43

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100802298	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02009186	InterPro:F-box-like_dom_sf	EnsemblPlantsGene:GLYMA_15G092600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914
GO:GO:0009987	UniProt:I1MF15	EnsemblPlants:KRH11156	ProteinID:KRH11156	ProteinID:KRH11156.1	ProteinID:KRH11157.1
PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SUPFAM:SSF81383	UniParc:UPI000233B160	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:7177044..7180068

Molecular Weight (calculated)

41928.9 Da

IEP (calculated)

6.108

GRAVY (calculated)

-0.124

Length

385 amino acids

Sequence
(BLAST)

001: MSSQRADLEC RIFPEPEIDH FDRLPDSLLL LVFNKIGDVK ALGRCCVVSR RFHSLVPQVE NVVVRVDCVI SDDDSSSSSA ASDKSRGPFW NLLRLVFGGI
101: VKPIQTLGQF LGPKRPSSSA AATATAATSP SSTSSLAVGS DEDSDGGVTH HSPTQVLKNF NEIRLLRIEL PSGELGIEDG VLLKWRADFG STLDNCVILG
201: ASSVFHPKDL TDPTTTNCNA NDDNGSIPDS FYTNGGLKLR VVWTISSLIA ASARHYLLQP IISEHATLDN LLLTDADGQG VLYMNREQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPH LELPTGVVLK GATLVAIRPS EQSPNTAKKE ASDLSWVSTA FEEPYRTAAT MLVKRRTYCL EMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.