Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054900 | Potato | extracellular, plasma membrane | 73.12 | 73.12 |
| PGSC0003DMT400049024 | Potato | cytosol | 48.12 | 19.79 |
| PGSC0003DMT400054525 | Potato | cytosol | 41.25 | 17.98 |
| Bra013303.1-P | Field mustard | cytosol | 35.62 | 15.12 |
| AT4G18380.1 | Thale cress | cytosol | 35.62 | 15.0 |
| GSMUA_Achr10P... | Banana | cytosol | 26.25 | 14.58 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 35.0 | 14.55 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 36.25 | 14.54 |
| KRH21091 | Soybean | cytosol | 35.0 | 14.47 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 25.62 | 12.24 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 27.5 | 11.8 |
| Os05t0510400-02 | Rice | cytosol | 30.0 | 11.65 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 23.75 | 11.41 |
| Zm00001d000314_P001 | Maize | cytosol | 29.38 | 11.41 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 30.0 | 11.4 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 29.38 | 11.33 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 26.88 | 11.23 |
| KXG22318 | Sorghum | cytosol | 29.38 | 11.06 |
| Zm00001d010705_P001 | Maize | cytosol | 28.12 | 10.92 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 28.75 | 10.77 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 23.75 | 10.67 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 25.0 | 9.98 |
| HORVU1Hr1G077600.2 | Barley | plastid | 30.0 | 9.86 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 24.38 | 9.73 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 24.38 | 9.7 |
| Os01t0770400-01 | Rice | cytosol | 23.75 | 9.6 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 24.38 | 9.54 |
| OQU78753 | Sorghum | cytosol | 21.88 | 9.43 |
| Zm00001d012644_P001 | Maize | cytosol | 23.75 | 9.27 |
| Zm00001d043324_P001 | Maize | cytosol | 23.12 | 9.23 |
| EES01093 | Sorghum | cytosol | 23.75 | 9.09 |
| PGSC0003DMT400097155 | Potato | cytosol | 19.38 | 8.86 |
| EES03683 | Sorghum | cytosol | 23.12 | 8.85 |
| HORVU3Hr1G075050.2 | Barley | plastid | 25.0 | 8.35 |
| PGSC0003DMT400024512 | Potato | cytosol | 16.25 | 7.65 |
| Zm00001d006500_P001 | Maize | cytosol | 14.38 | 5.68 |
| GSMUA_Achr11P... | Banana | extracellular | 0.0 | 0.0 |
| CDX78848 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400002031 | EnsemblPlantsGene:PGSC0003DMG400000773 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR31215 |
| PANTHER:PTHR31215:SF2 | PGSC:PGSC0003DMG400000773 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000296EE6F | UniProt:M0ZJI0 |
| MapMan:35.1 | : | : | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000773]
Coordinates
chr4:+:58869277..58870655
Molecular Weight (calculated)
18151.9 Da
IEP (calculated)
9.194
GRAVY (calculated)
0.302
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKRRTWVLL FISVYAILLS ISWNFHKSVL SWYKSTILAN SSNPTISISS SGVAYFICIC VIKGSFWVLC GSFSGSFTSY FVKPFQSLTQ LISISSRRCT
101: ASSSLVDDDF EQKFVTHHSP TQLLKNFDEI KLLRIELPSG ELGIYEGALL KWRADFVFYS
101: ASSSLVDDDF EQKFVTHHSP TQLLKNFDEI KLLRIELPSG ELGIYEGALL KWRADFVFYS
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.