Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002031 | Potato | extracellular | 73.12 | 73.12 |
| PGSC0003DMT400049024 | Potato | cytosol | 37.5 | 15.42 |
| PGSC0003DMT400054525 | Potato | cytosol | 34.38 | 14.99 |
| KRH21091 | Soybean | cytosol | 33.12 | 13.7 |
| AT4G18380.1 | Thale cress | cytosol | 31.88 | 13.42 |
| Bra013303.1-P | Field mustard | cytosol | 31.25 | 13.26 |
| GSMUA_Achr10P... | Banana | cytosol | 23.75 | 13.19 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 30.0 | 12.47 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 30.62 | 12.28 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 24.38 | 11.64 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 26.88 | 11.53 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 21.88 | 10.51 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 23.12 | 10.39 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 25.0 | 9.78 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 23.12 | 9.66 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 25.0 | 9.64 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 25.0 | 9.5 |
| Os05t0510400-02 | Rice | cytosol | 24.38 | 9.47 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 25.0 | 9.37 |
| Zm00001d000314_P001 | Maize | cytosol | 23.75 | 9.22 |
| KXG22318 | Sorghum | cytosol | 23.75 | 8.94 |
| Zm00001d012644_P001 | Maize | cytosol | 22.5 | 8.78 |
| Zm00001d010705_P001 | Maize | cytosol | 22.5 | 8.74 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 21.88 | 8.73 |
| Zm00001d043324_P001 | Maize | cytosol | 21.88 | 8.73 |
| PGSC0003DMT400024512 | Potato | cytosol | 18.12 | 8.53 |
| OQU78753 | Sorghum | cytosol | 19.38 | 8.36 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 20.62 | 8.23 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 20.62 | 8.21 |
| EES03683 | Sorghum | cytosol | 21.25 | 8.13 |
| EES01093 | Sorghum | cytosol | 21.25 | 8.13 |
| Os01t0770400-01 | Rice | cytosol | 19.38 | 7.83 |
| HORVU1Hr1G077600.2 | Barley | plastid | 23.12 | 7.6 |
| PGSC0003DMT400097155 | Potato | cytosol | 16.25 | 7.43 |
| HORVU3Hr1G075050.2 | Barley | plastid | 21.25 | 7.1 |
| Zm00001d006500_P001 | Maize | cytosol | 10.62 | 4.2 |
| GSMUA_Achr11P... | Banana | extracellular | 0.0 | 0.0 |
| CDX78848 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054900 | EnsemblPlantsGene:PGSC0003DMG400021302 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR31215 |
| PANTHER:PTHR31215:SF2 | PGSC:PGSC0003DMG400021302 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294B836 | UniProt:M1BX09 |
| MapMan:35.1 | : | : | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021302]
Coordinates
chr10:+:2365935..2366417
Molecular Weight (calculated)
18290.1 Da
IEP (calculated)
9.000
GRAVY (calculated)
0.324
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKRRTWVLL FIFVYAILLS IFWNFLKSVL FLYKSTISAN SSNPTISISS SGVSCFICIC VIRGNFWVLC GSFSGSFTSY FVKLFQSLTQ LISISSRRCT
101: ASSSLVDDDY EQNFVTHHSH TQLWKNFDEI KLLRIELPSG KLGIDESALL KWRADFGFYS
101: ASSSLVDDDY EQNFVTHHSH TQLWKNFDEI KLLRIELPSG KLGIDESALL KWRADFGFYS
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.