Factsheet for Zm00001d043324_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012644_P001	Maize	cytosol	84.54	82.68
EES03683	Sorghum	cytosol	84.54	81.1
EES01093	Sorghum	cytosol	83.04	79.67
OQU78753	Sorghum	cytosol	73.57	79.51
Os01t0770400-01	Rice	cytosol	73.82	74.75
TraesCS3A01G296700.1	Wheat	cytosol	72.32	72.32
TraesCS3D01G306000.1	Wheat	cytosol	71.07	71.07
TraesCS3B01G340400.1	Wheat	cytosol	70.82	70.65
Solyc02g070480.2.1	Tomato	cytosol	29.18	60.94
Zm00001d000314_P001	Maize	cytosol	62.09	60.44
GSMUA_Achr4P31500_001	Banana	cytosol	50.12	60.36
CDX78848	Canola	cytosol	14.21	58.76
Zm00001d010705_P001	Maize	cytosol	60.35	58.74
GSMUA_Achr7P07910_001	Banana	cytosol	55.36	57.96
GSMUA_Achr5P02540_001	Banana	cytosol	48.38	57.91
GSMUA_Achr4P22940_001	Banana	cytosol	53.87	57.91
GSMUA_Achr2P17340_001	Banana	cytosol	51.12	57.58
Bra022022.1-P	Field mustard	cytosol	53.12	57.41
CDY43956	Canola	cytosol	53.12	57.1
HORVU3Hr1G075050.2	Barley	plastid	68.08	56.99
CDX87738	Canola	cytosol	52.87	56.84
KRH11156	Soybean	cytosol, nucleus, vacuole	53.12	55.32
KRH21091	Soybean	cytosol	53.37	55.3
CDX77641	Canola	cytosol	48.88	54.14
GSMUA_Achr11P...	Banana	extracellular	10.22	53.95
CDY33458	Canola	cytosol	48.38	53.89
Bra013303.1-P	Field mustard	cytosol	50.37	53.58
PGSC0003DMT400054525	Potato	cytosol	48.63	53.13
AT5G46170.1	Thale cress	cytosol, plastid	52.12	52.91
AT4G18380.1	Thale cress	cytosol	50.12	52.89
VIT_10s0003g03880.t01	Wine grape	cytosol	52.62	52.88
Bra025034.1-P	Field mustard	cytosol	48.63	52.14
CDY26286	Canola	cytosol, nucleus, vacuole	48.63	52.14
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	48.63	52.14
CDX99890	Canola	cytosol, golgi, nucleus	47.38	51.77
AT1G30200.2	Thale cress	cytosol	48.88	51.72
Zm00001d006501_P001	Maize	cytosol	27.68	50.92
PGSC0003DMT400049024	Potato	cytosol	47.88	49.36
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.38	48.41
Solyc08g048430.2.1	Tomato	cytosol	38.4	47.24
Zm00001d038537_P001	Maize	cytosol	39.9	45.2
Zm00001d043125_P001	Maize	cytosol	38.9	44.57
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	39.15	44.35
Zm00001d043016_P001	Maize	plastid	27.18	42.75
Zm00001d028957_P001	Maize	cytosol	35.41	40.8
CDX99469	Canola	nucleus	20.95	37.0
Zm00001d047573_P001	Maize	plastid	39.4	36.32
CDX78847	Canola	cytosol	17.46	29.41
Zm00001d006500_P001	Maize	cytosol	28.93	28.64
PGSC0003DMT400002031	Potato	extracellular	9.23	23.12
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.73	21.88

Protein Annotations

EnsemblPlants:Zm00001d043324_P001	EnsemblPlants:Zm00001d043324_T001	EnsemblPlantsGene:Zm00001d043324	EntrezGene:100280529	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	ProteinID:ONM37551.1	SEG:seg
SUPFAM:SSF81383	UniParc:UPI000220744B	UniProt:A0A1D6NAI4	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box domain containing protein

Coordinates

chr3:+:196555233..196556438

Molecular Weight (calculated)

42664.2 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.054

Length

401 amino acids

Sequence
(BLAST)

001: MEAARQQQEE CPCGGAEAAD QFERLHDAVL LDVLNRIGDV KALGRCALVS RRFHALVPLV DSVFVRVDCV IPDDPPPSSS SSAAPGTSPR QAPAPAARGR
101: GALAHIARVL LGGIARPIHA LGQILSPAAA AVSRRSEALP ASPRAPVADV SHHSPSEVLR SFKELRRLHI ELPTGELGID DGVLLKWKAD FGSTLVSCVI
201: LGASSISSKP PTGYTQAESE TAAAATPDTS RETEEPGSLP DSLYTNGGLK LRVVWTISSL IAASARHYLL QPIICNHELL ESLDLTDADG QGVLTMDKRQ
301: LQELRVRPVF PSGSSHRTLM PALSMRLHYA PLIELPGGTL LKGATLVAIK PSEDALREGQ GAGAAGPVGT CWISEAFEEP YRTAAKVLLK RRAYCLEMNS
401: F

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.