Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006501_P001 | Maize | cytosol | 47.7 | 76.15 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 77.87 | 71.32 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 70.69 | 66.85 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 71.26 | 66.85 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 70.4 | 66.76 |
| Zm00001d043016_P001 | Maize | plastid | 48.85 | 66.67 |
| Os03t0321300-01 | Rice | cytosol | 73.56 | 66.67 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 68.97 | 64.69 |
| Zm00001d047573_P001 | Maize | plastid | 77.59 | 62.07 |
| Zm00001d038537_P001 | Maize | cytosol | 50.29 | 49.44 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 49.43 | 48.73 |
| Zm00001d043125_P001 | Maize | cytosol | 48.28 | 48.0 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 48.56 | 47.74 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 35.06 | 40.67 |
| Zm00001d043324_P001 | Maize | cytosol | 40.8 | 35.41 |
| Zm00001d012644_P001 | Maize | cytosol | 40.8 | 34.63 |
| Zm00001d000314_P001 | Maize | cytosol | 39.94 | 33.74 |
| Zm00001d010705_P001 | Maize | cytosol | 39.66 | 33.5 |
| Solyc04g072930.1.1 | Tomato | cytosol | 32.18 | 32.94 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 32.18 | 32.75 |
| PGSC0003DMT400024512 | Potato | cytosol | 31.9 | 32.65 |
| CDY26850 | Canola | cytosol | 27.01 | 31.54 |
| Bra012314.1-P | Field mustard | cytosol | 28.74 | 31.45 |
| CDX88418 | Canola | cytosol | 28.74 | 31.15 |
| CDY00435 | Canola | cytosol | 28.45 | 31.13 |
| CDY46634 | Canola | cytosol | 24.71 | 30.94 |
| Bra015630.1-P | Field mustard | cytosol | 28.45 | 30.84 |
| CDX87476 | Canola | cytosol | 28.45 | 30.84 |
| CDY21348 | Canola | cytosol | 27.87 | 29.94 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 29.31 | 29.91 |
| CDX91668 | Canola | cytosol | 27.3 | 29.78 |
| Bra031373.1-P | Field mustard | cytosol | 27.59 | 29.63 |
| AT1G22220.1 | Thale cress | cytosol | 26.72 | 29.62 |
| CDY41488 | Canola | cytosol | 27.01 | 29.47 |
| AT1G78100.1 | Thale cress | cytosol | 28.16 | 29.34 |
| CDY38235 | Canola | cytosol | 27.3 | 29.32 |
| CDY14629 | Canola | cytosol | 22.7 | 28.94 |
| Bra016384.1-P | Field mustard | cytosol | 16.38 | 28.5 |
| Bra008345.1-P | Field mustard | cytosol | 25.86 | 28.39 |
| PGSC0003DMT400097155 | Potato | cytosol | 26.72 | 26.57 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 15.8 | 26.44 |
| CDY32130 | Canola | cytosol | 16.95 | 21.77 |
| Zm00001d006500_P001 | Maize | cytosol | 24.14 | 20.74 |
Protein Annotations
| EnsemblPlants:Zm00001d028957_P001 | EnsemblPlants:Zm00001d028957_T001 | EnsemblPlantsGene:Zm00001d028957 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF5 | ProteinID:ONL97485.1 | SEG:seg |
| SUPFAM:SSF81383 | UniParc:UPI00084347F5 | UniProt:A0A1D6K137 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-box protein
Coordinates
chr1:+:52860772..52861856
Molecular Weight (calculated)
36953.4 Da
IEP (calculated)
9.137
GRAVY (calculated)
-0.082
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKHRVFAE DLLLAAAAEG EDHFDRVPDS LVLLIFNKLA DARSLGRCSA VSRRFSALVP LVDDACLRID RVIPADAADA GAPRPRAALS HLLKSVLLAV
101: LKPFAHCDAK SASPQKHAQQ QQQHHSPAQV LRNFSSIRSL RMELPVSDVG TDDGVVLRWK AVFGSTLQSC VILGGTRVDR AAAAAAGPPH APSSAPPRAT
201: TTAAASRSPC TPTAASSCAW HYLLREIVKE HPTLERVALT DAGGQGTLSM GRDQLREFRD RPLAAAPAAA ANRTQVPACN MKLRYAPLLE LSDGTRIHGA
301: TLVVIKPVGD AGGKDLDELG AGAFDGPLRE AVAALGKRRA YLLEMNGF
101: LKPFAHCDAK SASPQKHAQQ QQQHHSPAQV LRNFSSIRSL RMELPVSDVG TDDGVVLRWK AVFGSTLQSC VILGGTRVDR AAAAAAGPPH APSSAPPRAT
201: TTAAASRSPC TPTAASSCAW HYLLREIVKE HPTLERVALT DAGGQGTLSM GRDQLREFRD RPLAAAPAAA ANRTQVPACN MKLRYAPLLE LSDGTRIHGA
301: TLVVIKPVGD AGGKDLDELG AGAFDGPLRE AVAALGKRRA YLLEMNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.