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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P03360_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P24210_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr2P04250_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr4P25050_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr5P20550_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr8P12830_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_AchrUn_... AT4G28720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 67.14 68.1
GSMUA_Achr7P21580_001 Banana cytosol 65.44 65.44
GSMUA_Achr3P18400_001 Banana cytosol 67.14 65.29
GSMUA_Achr10P... Banana cytosol 63.17 62.99
Zm00001d006501_P001 Maize cytosol 35.98 58.26
HORVU4Hr1G052070.1 Barley cytosol 55.81 53.68
EER94941 Sorghum cytosol, peroxisome, plastid 56.94 52.89
Os03t0321300-01 Rice cytosol 57.51 52.86
TraesCS4D01G178800.1 Wheat cytosol, peroxisome, plastid 54.96 52.72
TraesCS4B01G177100.1 Wheat cytosol 55.24 52.56
TraesCS4A01G127600.1 Wheat cytosol, peroxisome, plastid 54.11 51.48
Zm00001d028957_P001 Maize cytosol 48.73 49.43
Zm00001d043016_P001 Maize plastid 33.43 46.27
Zm00001d047573_P001 Maize plastid 55.24 44.83
GSMUA_Achr4P22940_001 Banana cytosol 47.03 44.5
GSMUA_Achr7P07910_001 Banana cytosol 48.16 44.39
GSMUA_Achr2P17340_001 Banana cytosol 44.76 44.38
GSMUA_Achr5P02540_001 Banana cytosol 41.93 44.18
VIT_18s0001g05310.t01 Wine grape cytosol 37.11 43.67
GSMUA_Achr4P31500_001 Banana cytosol 40.79 43.24
GSMUA_Achr11P... Banana extracellular 8.22 38.16
GSMUA_Achr7P01170_001 Banana mitochondrion 43.91 37.9
VIT_06s0009g03690.t01 Wine grape cytosol 35.98 37.13
Solyc04g072930.1.1 Tomato cytosol 34.84 36.18
PGSC0003DMT400024512 Potato cytosol 34.84 36.18
VIT_06s0009g03670.t01 Wine grape cytosol 34.56 35.78
VIT_06s0009g03680.t01 Wine grape cytosol 20.4 34.62
Bra016384.1-P Field mustard cytosol 18.98 33.5
CDX87476 Canola cytosol 29.75 32.71
AT1G22220.1 Thale cress cytosol 28.9 32.48
CDX88418 Canola cytosol 29.46 32.4
Bra015630.1-P Field mustard cytosol 29.46 32.4
Bra031373.1-P Field mustard cytosol 29.46 32.1
CDY46634 Canola cytosol 25.21 32.01
CDY21348 Canola cytosol 29.18 31.79
Bra012314.1-P Field mustard cytosol 28.61 31.76
CDY00435 Canola cytosol 28.33 31.45
GSMUA_Achr6P15980_001 Banana mitochondrion 66.01 31.23
AT1G78100.1 Thale cress cytosol 29.46 31.14
CDY26850 Canola cytosol 26.06 30.87
CDY38235 Canola cytosol 28.33 30.86
CDY41488 Canola cytosol 27.76 30.72
CDX91668 Canola cytosol 27.48 30.41
GSMUA_Achr10P... Banana cytosol 24.36 29.86
Bra008345.1-P Field mustard cytosol 26.35 29.34
CDY14629 Canola cytosol 22.66 29.3
PGSC0003DMT400097155 Potato cytosol 28.33 28.57
CDY32130 Canola cytosol 17.85 23.25
Protein Annotations
EnsemblPlants:GSMUA_Achr6P32090_001EnsemblPlants:GSMUA_Achr6T32090_001EnsemblPlantsGene:GSMUA_Achr6G32090_001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR31215PANTHER:PTHR31215:SF3
PFAM:PF12937PFscan:PS50181SUPFAM:SSF81383UniParc:UPI000295F08FUniProt:M0TC04MapMan:19.2.2.8.1.4.6
Description
Putative F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr6G32090_001]
Coordinates
chr6:+:31618105..31619371
Molecular Weight (calculated)
39345.6 Da
IEP (calculated)
9.246
GRAVY (calculated)
-0.227
Length
353 amino acids
Sequence
(BLAST)
001: MKSRSQIRAG RSRFPDQFDR IPDPLILVIF NKLADARSLG RCAAVSRRFR SLVPLVDDVY VKIDRVVTVD GDSCRSLTLS FPRPRKCFSH FLKLMLFAIL
101: RPIRNLHNPH CGGKRFLPQV SHRSPAQVLK NFRHVRRLRI ELPAGDVRTE DGVLLRWRAE FGSTLESCVI LGGTPTDRLP PSSGRAGKAE DDGSMPESFY
201: TNGGLKLRVV WAIGTLIAAS TRHYLLQEII EDHPTLESLV LTDADEQGTL SMGIEQLKEF REKPLVASAS STRTHLPASN MKLRYAPYLE LPEGMAMQGA
301: TLVAISPATD DTDGNSGREE CDSFIRGAFE GPLDAAVKSL VERRIYLMEI NGF
Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.