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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P03360_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P24210_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr2P04250_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr4P25050_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr5P20550_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr8P12830_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_AchrUn_... AT4G28720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr3P18400_001 Banana cytosol 81.03 77.69
GSMUA_Achr7P21580_001 Banana cytosol 71.55 70.54
GSMUA_Achr6P32090_001 Banana cytosol 68.1 67.14
GSMUA_Achr10P... Banana cytosol 67.53 66.38
GSMUA_Achr2P17340_001 Banana cytosol 47.41 46.35
GSMUA_Achr4P22940_001 Banana cytosol 48.56 45.31
GSMUA_Achr7P07910_001 Banana cytosol 49.71 45.17
GSMUA_Achr5P02540_001 Banana cytosol 42.53 44.18
VIT_18s0001g05310.t01 Wine grape cytosol 37.93 44.0
GSMUA_Achr4P31500_001 Banana cytosol 41.67 43.54
GSMUA_Achr11P... Banana extracellular 8.91 40.79
GSMUA_Achr7P01170_001 Banana mitochondrion 44.83 38.14
CDY46634 Canola cytosol 30.17 37.77
VIT_06s0009g03680.t01 Wine grape cytosol 22.41 37.5
GSMUA_Achr6P15980_001 Banana mitochondrion 80.17 37.4
VIT_06s0009g03690.t01 Wine grape cytosol 36.49 37.13
AT1G22220.1 Thale cress cytosol 33.05 36.62
PGSC0003DMT400024512 Potato cytosol 35.06 35.88
Solyc04g072930.1.1 Tomato cytosol 34.77 35.59
Bra012314.1-P Field mustard cytosol 32.47 35.53
VIT_06s0009g03670.t01 Wine grape cytosol 34.77 35.48
CDY00435 Canola cytosol 32.18 35.22
Bra016384.1-P Field mustard cytosol 20.11 35.0
CDX87476 Canola cytosol 32.18 34.89
Bra015630.1-P Field mustard cytosol 32.18 34.89
CDX88418 Canola cytosol 32.18 34.89
AT1G78100.1 Thale cress cytosol 33.33 34.73
CDY26850 Canola cytosol 29.6 34.56
CDY14629 Canola cytosol 26.44 33.7
CDY21348 Canola cytosol 31.32 33.64
Bra031373.1-P Field mustard cytosol 31.03 33.33
CDY38235 Canola cytosol 30.75 33.02
CDY41488 Canola cytosol 29.89 32.6
Bra008345.1-P Field mustard cytosol 29.6 32.49
CDX91668 Canola cytosol 29.31 31.97
PGSC0003DMT400097155 Potato cytosol 31.9 31.71
GSMUA_Achr10P... Banana cytosol 25.0 30.21
CDY32130 Canola cytosol 19.54 25.09
Protein Annotations
EnsemblPlants:GSMUA_Achr10P12730_001EnsemblPlants:GSMUA_Achr10T12730_001EnsemblPlantsGene:GSMUA_Achr10G12730_001GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfPANTHER:PTHR31215PANTHER:PTHR31215:SF3SEG:segSUPFAM:SSF81383UniParc:UPI000296FCA9
UniProt:M0RHP9MapMan:19.2.2.8.1.4.6::::
Description
F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr10G12730_001]
Coordinates
chr10:+:21662472..21663518
Molecular Weight (calculated)
38428.3 Da
IEP (calculated)
9.591
GRAVY (calculated)
-0.136
Length
348 amino acids
Sequence
(BLAST)
001: MQSDPSLYRD HFDRIPDSLV LVIFNKLADI QSLGRSSTVS KRFNALVPLV HDVFVKLDRF VSVDGESDDA LSLSSPKPRN LFAHLLRLLL FAFLRPFQNL
101: QNINDGNKPL LPQLSRHSPA RVLKNFTHVR NLRIELPAGD VGTEDGVFLK WTAEFGSTLQ NCVILGGTRM ERRPASANLE GSVEDNGSIP ESFYTNGGLK
201: LRVVWTISSL IAASTRHYLL RQIINDHPTL RSLVLTDADG QGTLIMGAEQ LKEFREKPLA ASLSSNRTQV PASNMKLRYA PYLELAEGMG MQGVTLVAIK
301: PAGEGTSCGN SSRKEAEAFI CGAFDGPFRA AVKALVKRRT YLLEMNGF
Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.