Factsheet for VIT_18s0001g05310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g04800.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	VIT_07s0005g04800.t01	AT4G28720.1	21798944
AT1G78100.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072930.1.1	Tomato	cytosol	56.33	49.71
PGSC0003DMT400024512	Potato	cytosol	55.67	49.12
CDY26850	Canola	cytosol	47.67	47.99
AT1G22220.1	Thale cress	cytosol	49.33	47.13
AT1G78100.1	Thale cress	cytosol	51.33	46.11
Bra015630.1-P	Field mustard	cytosol	48.67	45.48
CDX87476	Canola	cytosol	48.67	45.48
CDX88418	Canola	cytosol	48.67	45.48
CDY14629	Canola	cytosol	41.33	45.42
Bra016384.1-P	Field mustard	cytosol	30.0	45.0
Bra008345.1-P	Field mustard	cytosol	46.67	44.16
Bra012314.1-P	Field mustard	cytosol	46.33	43.71
CDY46634	Canola	cytosol	40.33	43.53
CDY00435	Canola	cytosol	46.0	43.4
CDY38235	Canola	cytosol	46.67	43.21
Zm00001d006501_P001	Maize	cytosol	31.33	43.12
Bra031373.1-P	Field mustard	cytosol	46.33	42.9
CDY41488	Canola	cytosol	45.33	42.63
CDX91668	Canola	cytosol	45.33	42.63
CDY21348	Canola	cytosol	45.67	42.28
TraesCS3B01G368000.1	Wheat	cytosol	45.67	38.7
Zm00001d038537_P001	Maize	cytosol	45.33	38.42
TraesCS3D01G329900.1	Wheat	cytosol	45.33	38.2
TraesCS1B01G318500.1	Wheat	cytosol	45.33	38.2
EES19721	Sorghum	cytosol	45.0	38.14
Os01t0812200-01	Rice	cytosol	44.67	37.96
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	44.0	37.93
TraesCS1D01G307200.1	Wheat	cytosol	45.0	37.92
TraesCS1A01G307800.1	Wheat	cytosol	45.0	37.92
HORVU4Hr1G052070.1	Barley	cytosol	46.33	37.87
HORVU1Hr1G068570.1	Barley	cytosol	44.33	37.68
TraesCS3D01G518800.1	Wheat	cytosol	39.67	37.54
HORVU0Hr1G030450.1	Barley	cytosol	44.0	37.39
GSMUA_Achr7P21580_001	Banana	cytosol	44.0	37.39
GSMUA_Achr3P18400_001	Banana	cytosol	45.0	37.19
GSMUA_Achr6P32090_001	Banana	cytosol	43.67	37.11
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	43.67	37.01
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	45.33	36.96
TraesCS4B01G177100.1	Wheat	cytosol	45.67	36.93
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	44.0	36.77
EER94941	Sorghum	cytosol, peroxisome, plastid	46.33	36.58
GSMUA_Achr10P...	Banana	cytosol	43.0	36.44
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	45.0	36.39
Zm00001d043125_P001	Maize	cytosol	42.33	36.29
EES01639	Sorghum	cytosol	42.67	36.16
Os03t0321300-01	Rice	cytosol	46.0	35.94
Zm00001d028957_P001	Maize	cytosol	40.67	35.06
VIT_10s0003g03880.t01	Wine grape	cytosol	45.67	34.34
Zm00001d043016_P001	Maize	plastid	29.0	34.12
Zm00001d047573_P001	Maize	plastid	45.33	31.26
VIT_06s0009g03690.t01	Wine grape	cytosol	35.33	30.99
VIT_06s0009g03670.t01	Wine grape	cytosol	35.0	30.79
CDY32130	Canola	cytosol	27.67	30.63
Os05t0490300-01	Rice	mitochondrion	45.33	30.22
VIT_06s0009g03680.t01	Wine grape	cytosol	19.67	28.37
GSMUA_Achr6P15980_001	Banana	mitochondrion	44.33	17.83

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100254118	wikigene:100254118	MapMan:19.2.2.8.1.4.6	ProteinID:CCB45558	ProteinID:CCB45558.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H0W1	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810
EntrezGene:LOC100254118	wikigene:LOC100254118	PFAM:PF00646	PANTHER:PTHR31215	SUPFAM:SSF81383	UniParc:UPI0002108102
ArrayExpress:VIT_18s0001g05310	EnsemblPlantsGene:VIT_18s0001g05310	EnsemblPlants:VIT_18s0001g05310.t01	RefSeq:XP_002284195	RefSeq:XP_002284195.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:4268207..4269413

Molecular Weight (calculated)

33748.3 Da

IEP (calculated)

8.493

GRAVY (calculated)

-0.157

Length

300 amino acids

Sequence
(BLAST)

001: MHQMSEDSFD RLPDPLILVI FNSVADIKTL IRCRAVSKRF NSLVPQAETL VLKVDRVIST DSDGSFFLSF LKSIFRSLHH IISPKSLPIQ PRPHNSPTQI
101: LRGFDRIRNL EIELPGGDLC LEKGAVLKWK AEFGKRLKSC VIMGYRGLGE GEELDFGGDM DGGLKVRVVW TISALIAASA RHYLLRELIR EHRELERLVL
201: RDRDGEGTVV MDREALREDK SRTKVPAVQM RMRHEPLLEL EGCGVRMGGA TLVVVTPIKD GRKTGTEEAG LVCDAFEGMF GEAARTLLKT RTYLLEMNSF

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.