Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G318500.1 | Wheat | cytosol | 98.88 | 98.88 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 98.6 | 98.6 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 94.38 | 95.18 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 93.82 | 94.62 |
| EES19721 | Sorghum | cytosol | 88.2 | 88.7 |
| Zm00001d038537_P001 | Maize | cytosol | 87.64 | 88.14 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 78.37 | 88.01 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 85.39 | 85.88 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 80.62 | 80.62 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 74.16 | 74.79 |
| GSMUA_Achr10P... | Banana | cytosol | 69.94 | 70.34 |
| Os05t0490300-01 | Rice | mitochondrion | 88.76 | 70.22 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 58.43 | 56.52 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 37.92 | 45.0 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 48.03 | 42.64 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 46.91 | 39.11 |
| Bra016384.1-P | Field mustard | cytosol | 21.91 | 39.0 |
| CDY46634 | Canola | cytosol | 28.65 | 36.69 |
| AT1G22220.1 | Thale cress | cytosol | 32.3 | 36.62 |
| Bra031373.1-P | Field mustard | cytosol | 32.87 | 36.11 |
| CDY41488 | Canola | cytosol | 32.3 | 36.05 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 34.55 | 35.96 |
| Bra012314.1-P | Field mustard | cytosol | 32.02 | 35.85 |
| CDY21348 | Canola | cytosol | 32.58 | 35.8 |
| CDX91668 | Canola | cytosol | 32.02 | 35.74 |
| PGSC0003DMT400024512 | Potato | cytosol | 33.99 | 35.59 |
| Solyc04g072930.1.1 | Tomato | cytosol | 33.99 | 35.59 |
| CDY00435 | Canola | cytosol | 31.74 | 35.53 |
| CDX88418 | Canola | cytosol | 32.02 | 35.51 |
| CDY38235 | Canola | cytosol | 32.3 | 35.49 |
| CDY26850 | Canola | cytosol | 29.21 | 34.9 |
| CDX87476 | Canola | cytosol | 31.46 | 34.89 |
| Bra015630.1-P | Field mustard | cytosol | 31.46 | 34.89 |
| AT1G78100.1 | Thale cress | cytosol | 31.74 | 33.83 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 19.66 | 33.65 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 31.74 | 33.14 |
| Bra008345.1-P | Field mustard | cytosol | 29.21 | 32.81 |
| CDY14629 | Canola | cytosol | 25.0 | 32.6 |
| PGSC0003DMT400097155 | Potato | cytosol | 31.74 | 32.29 |
| CDY32130 | Canola | cytosol | 19.38 | 25.46 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G307200.1 | EnsemblPlantsGene:TraesCS1D01G307200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
No Description!
Coordinates
chr1D:-:403706953..403708023
Molecular Weight (calculated)
38835.9 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.128
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPKARIHAD PALDFELDLF DCLPDSLVLL ILNKVEDVRS LGRCSAASKR LNGLVPHVHD VCVKIDRVVA VDGDGEDALN LTSPKPRNIL SHFLKLMLFT
101: IIKPFHNARG PNGAGRPLFP QLAHHSPAQV LRSFTHVRNL HIELPSGDVG TEDGVLLKWR AEYGSTLQNC VILGGTRVDR KPVGAEHEPS SEDNGSMPES
201: FYTNGGLKLR VVWTISSLIA ASTRHYLLRS IIKEHPTLVS LVLTDADGQG TLTMGAEQLK EFRENQLSAS ACSNRTQVPA CNMKLKYAPY LELPGGIALQ
301: GATLVAIKPS TEGSNGGHVS RKETDAFISG AFDGPFKFAA KALMKRRTYL LEMNGF
101: IIKPFHNARG PNGAGRPLFP QLAHHSPAQV LRSFTHVRNL HIELPSGDVG TEDGVLLKWR AEYGSTLQNC VILGGTRVDR KPVGAEHEPS SEDNGSMPES
201: FYTNGGLKLR VVWTISSLIA ASTRHYLLRS IIKEHPTLVS LVLTDADGQG TLTMGAEQLK EFRENQLSAS ACSNRTQVPA CNMKLKYAPY LELPGGIALQ
301: GATLVAIKPS TEGSNGGHVS RKETDAFISG AFDGPFKFAA KALMKRRTYL LEMNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.