CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11777
EES15155
KXG35000
OQU88910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	EES11777	AT4G28720.1	21798944
AT1G78100.1	EES15155	AT4G28720.1	21798944
AT1G78100.1	KXG35000	AT4G28720.1	21798944
AT1G78100.1	OQU88910	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038537_P001	Maize	cytosol	96.33	96.33
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	95.2	95.2
TraesCS1D01G307200.1	Wheat	cytosol	88.7	88.2
TraesCS1A01G307800.1	Wheat	cytosol	88.7	88.2
TraesCS1B01G318500.1	Wheat	cytosol	88.14	87.64
HORVU1Hr1G068570.1	Barley	cytosol	87.01	87.25
HORVU0Hr1G030450.1	Barley	cytosol	86.44	86.69
TraesCS3D01G518800.1	Wheat	cytosol	75.42	84.23
EES01639	Sorghum	cytosol	81.64	81.64
GSMUA_Achr7P21580_001	Banana	cytosol	74.29	74.5
GSMUA_Achr10P...	Banana	cytosol	72.03	72.03
Os05t0490300-01	Rice	mitochondrion	89.27	70.22
EER94941	Sorghum	cytosol, peroxisome, plastid	59.32	55.26
VIT_18s0001g05310.t01	Wine grape	cytosol	38.14	45.0
OQU78753	Sorghum	cytosol	42.09	40.16
KXG22318	Sorghum	cytosol	46.05	38.35
EES03683	Sorghum	cytosol	44.92	38.04
EES01093	Sorghum	cytosol	44.35	37.56
Solyc04g072930.1.1	Tomato	cytosol	35.59	37.06
Bra016384.1-P	Field mustard	cytosol	20.9	37.0
VIT_06s0009g03690.t01	Wine grape	cytosol	35.59	36.84
PGSC0003DMT400024512	Potato	cytosol	35.31	36.76
CDY46634	Canola	cytosol	27.97	35.61
AT1G22220.1	Thale cress	cytosol	31.36	35.35
Bra012314.1-P	Field mustard	cytosol	31.36	34.91
CDY21348	Canola	cytosol	31.92	34.88
Bra031373.1-P	Field mustard	cytosol	31.92	34.88
VIT_06s0009g03680.t01	Wine grape	cytosol	20.34	34.62
VIT_06s0009g03670.t01	Wine grape	cytosol	33.33	34.6
CDY00435	Canola	cytosol	31.07	34.59
CDY38235	Canola	cytosol	31.64	34.57
CDY41488	Canola	cytosol	31.07	34.48
CDX91668	Canola	cytosol	31.07	34.48
CDX88418	Canola	cytosol	31.07	34.27
CDY26850	Canola	cytosol	28.81	34.23
AT1G78100.1	Thale cress	cytosol	32.2	34.13
CDX87476	Canola	cytosol	30.51	33.64
Bra015630.1-P	Field mustard	cytosol	30.51	33.64
Bra008345.1-P	Field mustard	cytosol	28.81	32.18
CDY14629	Canola	cytosol	24.29	31.5
PGSC0003DMT400097155	Potato	cytosol	30.79	31.14
CDY32130	Canola	cytosol	19.21	25.09

Protein Annotations

MapMan:19.2.2.8.1.4.6	EntrezGene:8077034	UniProt:C5Z075	EnsemblPlants:EES19721	ProteinID:EES19721	ProteinID:EES19721.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009736
GO:GO:0009914	GO:GO:0009987	PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	EnsemblPlantsGene:SORBI_3009G179300	SUPFAM:SSF81383
UniParc:UPI0001A88F5C	RefSeq:XP_002441291.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:53391239..53393486

Molecular Weight (calculated)

39061.3 Da

IEP (calculated)

8.840

GRAVY (calculated)

-0.206

Length

354 amino acids

Sequence
(BLAST)

001: MHPKARIHAD PVREVDHFDC LPDSLVLLIL NKVEDVRSLG RCYAVSKRLC GLVPLVHDVY VKIDRVVAVD GDAEDTLNLS SPKPRNIFSH FLKLMLLTII
101: KPFHSMRNPN GTGRPLFPQL SQHSPAQVLR NFTHVRNLRI ELPSGDVGTE EGVLLKWRAE YGSTLQNCVI LGGTRVDRKP VGGEHEPSLE DNGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII NDHPTLRSLV LTDADGQGTL CMGAEQLKEF RENQLSASAC SNRTQVPACN MKLKYAPYLE LPGGMALQGA
301: TLVAIKPSPE GSNGGHPNRK EADGFVFGAF DGPFKAAVKA LMKRRTYLLE MNGF

Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)

001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF

Arabidopsis Description

F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.