Factsheet for HORVU1Hr1G068570.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001820.1
HORVU2Hr1G116980.1
HORVU5Hr1G050630.3
HORVU5Hr1G125560.2
HORVU7Hr1G007860.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	HORVU2Hr1G001820.1	AT4G28720.1	21798944
AT1G78100.1	HORVU2Hr1G116980.1	AT4G28720.1	21798944
AT1G78100.1	HORVU5Hr1G050630.3	AT4G28720.1	21798944
AT1G78100.1	HORVU5Hr1G125560.2	AT4G28720.1	21798944
AT1G78100.1	HORVU7Hr1G007860.1	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030450.1	Barley	cytosol	99.43	99.43
TraesCS1B01G318500.1	Wheat	cytosol	95.75	94.94
TraesCS1D01G307200.1	Wheat	cytosol	95.18	94.38
TraesCS1A01G307800.1	Wheat	cytosol	95.18	94.38
EES19721	Sorghum	cytosol	87.25	87.01
Zm00001d038537_P001	Maize	cytosol	86.4	86.16
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	84.42	84.18
GSMUA_Achr7P21580_001	Banana	cytosol	74.5	74.5
GSMUA_Achr10P...	Banana	cytosol	70.82	70.62
Os05t0490300-01	Rice	mitochondrion	88.1	69.11
HORVU4Hr1G052070.1	Barley	cytosol	58.64	56.4
VIT_18s0001g05310.t01	Wine grape	cytosol	37.68	44.33
Bra016384.1-P	Field mustard	cytosol	22.95	40.5
CDY46634	Canola	cytosol	29.46	37.41
AT1G22220.1	Thale cress	cytosol	32.86	36.94
CDY41488	Canola	cytosol	33.14	36.68
Bra012314.1-P	Field mustard	cytosol	32.86	36.48
CDY38235	Canola	cytosol	33.43	36.42
Bra031373.1-P	Field mustard	cytosol	33.43	36.42
CDY21348	Canola	cytosol	33.43	36.42
CDX91668	Canola	cytosol	32.86	36.36
VIT_06s0009g03690.t01	Wine grape	cytosol	35.13	36.26
CDY00435	Canola	cytosol	32.58	36.16
CDX88418	Canola	cytosol	32.29	35.51
PGSC0003DMT400024512	Potato	cytosol	33.99	35.29
Solyc04g072930.1.1	Tomato	cytosol	33.71	35.0
CDY26850	Canola	cytosol	29.46	34.9
CDX87476	Canola	cytosol	31.73	34.89
Bra015630.1-P	Field mustard	cytosol	31.73	34.89
HORVU3Hr1G075050.2	Barley	plastid	47.03	34.66
HORVU1Hr1G077600.2	Barley	plastid	47.31	34.29
AT1G78100.1	Thale cress	cytosol	31.73	33.53
VIT_06s0009g03680.t01	Wine grape	cytosol	19.55	33.17
VIT_06s0009g03670.t01	Wine grape	cytosol	32.01	33.14
Bra008345.1-P	Field mustard	cytosol	29.18	32.49
PGSC0003DMT400097155	Potato	cytosol	32.01	32.29
CDY14629	Canola	cytosol	24.93	32.23
CDY32130	Canola	cytosol	20.4	26.57

Protein Annotations

EnsemblPlants:HORVU1Hr1G068570.1	EnsemblPlantsGene:HORVU1Hr1G068570	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	SUPFAM:SSF81383	UniParc:UPI00029684CF	UniProt:M0WNR9	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chrchr1H:+:481639444..481641380

Molecular Weight (calculated)

38664.7 Da

IEP (calculated)

8.103

GRAVY (calculated)

-0.126

Length

353 amino acids

Sequence
(BLAST)

001: MLPKARIHAD PALELEDDRF DCLPDSIVLL ILNKVEDVRS LGRCSAASKR FNGLVPLVHD VCVKIDHVVA VDGDAEDPLN LSSPKPRNIL SHFLKLMLFT
101: IIKPFHNARG AGRPLFPQLA HHSPAQVLRS FTHVRNLHIE LPSGDVGTED GVLLKWRAEY GSTLQNCVIL GGTRVDRKPV GAEHEPSSED NGSMPESFYT
201: NGGLKLRVVW TISSLIAAST RHYLLRSIIK EHPTLVSLVL TDADGQGTLT MGAEQLKDFR ENQLSASACS NRTHVPACNM KLKYAPYLEL PGGIALQGAT
301: LVAIKPSTEG SNCGHISRKE TDAFISGAFD GPFKFAAKAL MKRRTYLLEM NGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.