Factsheet for VIT_06s0009g03680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g03690.t01	Wine grape	cytosol	49.52	30.12
VIT_06s0009g03670.t01	Wine grape	cytosol	46.63	28.45
Zm00001d006501_P001	Maize	cytosol	26.44	25.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	37.5	22.41
GSMUA_Achr7P21580_001	Banana	cytosol	35.58	20.96
VIT_10s0003g03880.t01	Wine grape	cytosol	39.9	20.8
Zm00001d043016_P001	Maize	plastid	25.48	20.78
Zm00001d038537_P001	Maize	cytosol	35.1	20.62
GSMUA_Achr6P32090_001	Banana	cytosol	34.62	20.4
GSMUA_Achr3P18400_001	Banana	cytosol	35.58	20.39
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	34.62	20.34
EES19721	Sorghum	cytosol	34.62	20.34
Os01t0812200-01	Rice	cytosol	34.13	20.11
Zm00001d043125_P001	Maize	cytosol	33.65	20.0
VIT_18s0001g05310.t01	Wine grape	cytosol	28.37	19.67
TraesCS1A01G307800.1	Wheat	cytosol	33.65	19.66
TraesCS1B01G318500.1	Wheat	cytosol	33.65	19.66
TraesCS1D01G307200.1	Wheat	cytosol	33.65	19.66
TraesCS3D01G329900.1	Wheat	cytosol	33.65	19.66
HORVU1Hr1G068570.1	Barley	cytosol	33.17	19.55
HORVU0Hr1G030450.1	Barley	cytosol	33.17	19.55
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	33.65	19.5
EES01639	Sorghum	cytosol	33.17	19.49
TraesCS3B01G368000.1	Wheat	cytosol	33.17	19.49
HORVU4Hr1G052070.1	Barley	cytosol	34.13	19.35
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	33.65	19.02
EER94941	Sorghum	cytosol, peroxisome, plastid	34.62	18.95
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	33.65	18.87
TraesCS4B01G177100.1	Wheat	cytosol	33.65	18.87
PGSC0003DMT400097155	Potato	cytosol	31.73	18.86
GSMUA_Achr10P...	Banana	cytosol	31.25	18.36
Os03t0321300-01	Rice	cytosol	33.65	18.23
TraesCS3D01G518800.1	Wheat	cytosol	25.96	17.03
Zm00001d047573_P001	Maize	plastid	34.13	16.32
Zm00001d028957_P001	Maize	cytosol	26.44	15.8
Os05t0490300-01	Rice	mitochondrion	33.17	15.33
GSMUA_Achr6P15980_001	Banana	mitochondrion	36.06	10.05

Protein Annotations

ArrayExpress:VIT_06s0009g03680	EMBL:FN595504	EnsemblPlants:VIT_06s0009g03680.t01	EnsemblPlantsGene:VIT_06s0009g03680	EntrezGene:109122753	GO:GO:0005575
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719
GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	PANTHER:PTHR31215	PANTHER:PTHR31215:SF12	ProteinID:CCB49032
ProteinID:CCB49032.1	RefSeq:XP_019076004.1	UniParc:UPI00021095A0	UniProt:F6HA12	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr6:-:16930155..16931267

Molecular Weight (calculated)

23536.8 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.069

Length

208 amino acids

Sequence
(BLAST)

001: MVLLESCPPK SIPNQGLFVD FLKILVRPLQ FLQQIVLQKS SGTLDLSEDS VHQIAGVLKH FSEINCLHIQ LPCHGGGLRS SNSADSLLKW KAEFGRELES
101: CVLLGATSFQ RNDTISSIHE EYYKSLTADE LKLRVMWMIS SLFAASARHC LLKQFVDNND HKMLRGVVIA DASKQGRLWM RQELLEELRT CVNSSMERTR
201: VPALRVKL

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.