Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043016_P001 | Maize | plastid | 59.63 | 50.98 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 83.49 | 47.89 |
| Zm00001d028957_P001 | Maize | cytosol | 76.15 | 47.7 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 80.28 | 47.17 |
| Os03t0321300-01 | Rice | cytosol | 83.03 | 47.14 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 78.9 | 46.87 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 78.9 | 46.74 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 77.98 | 45.82 |
| Zm00001d047573_P001 | Maize | plastid | 81.65 | 40.92 |
| Zm00001d038537_P001 | Maize | cytosol | 61.93 | 38.14 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 60.09 | 37.01 |
| Zm00001d043125_P001 | Maize | cytosol | 57.8 | 36.0 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 58.26 | 35.98 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 43.12 | 31.33 |
| CDY14629 | Canola | cytosol | 34.86 | 27.84 |
| Zm00001d043324_P001 | Maize | cytosol | 50.92 | 27.68 |
| Zm00001d012644_P001 | Maize | cytosol | 51.38 | 27.32 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 25.23 | 26.44 |
| Zm00001d010705_P001 | Maize | cytosol | 49.54 | 26.21 |
| Zm00001d000314_P001 | Maize | cytosol | 49.08 | 25.97 |
| CDY26850 | Canola | cytosol | 35.32 | 25.84 |
| Bra012314.1-P | Field mustard | cytosol | 36.7 | 25.16 |
| Solyc04g072930.1.1 | Tomato | cytosol | 38.99 | 25.0 |
| PGSC0003DMT400024512 | Potato | cytosol | 38.53 | 24.71 |
| CDY21348 | Canola | cytosol | 36.7 | 24.69 |
| CDY00435 | Canola | cytosol | 35.78 | 24.53 |
| Bra031373.1-P | Field mustard | cytosol | 36.24 | 24.38 |
| AT1G78100.1 | Thale cress | cytosol | 37.16 | 24.25 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 37.61 | 23.98 |
| CDY46634 | Canola | cytosol | 30.28 | 23.74 |
| AT1G22220.1 | Thale cress | cytosol | 33.95 | 23.57 |
| CDY38235 | Canola | cytosol | 34.86 | 23.46 |
| CDX88418 | Canola | cytosol | 34.4 | 23.36 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 36.24 | 23.17 |
| Bra015630.1-P | Field mustard | cytosol | 33.95 | 23.05 |
| CDX87476 | Canola | cytosol | 33.95 | 23.05 |
| CDX91668 | Canola | cytosol | 33.49 | 22.88 |
| Bra008345.1-P | Field mustard | cytosol | 33.03 | 22.71 |
| CDY41488 | Canola | cytosol | 33.03 | 22.57 |
| PGSC0003DMT400097155 | Potato | cytosol | 32.57 | 20.29 |
| CDY32130 | Canola | cytosol | 21.56 | 17.34 |
| Bra016384.1-P | Field mustard | cytosol | 15.6 | 17.0 |
| Zm00001d006500_P001 | Maize | cytosol | 16.97 | 9.14 |
Protein Annotations
| EnsemblPlants:Zm00001d006501_P001 | EnsemblPlants:Zm00001d006501_T001 | EnsemblPlantsGene:Zm00001d006501 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF5 | ProteinID:ONM24072.1 |
| SEG:seg | UniParc:UPI0002208E94 | UniProt:A0A1D6EX52 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-box protein
Coordinates
chr2:+:210090731..210091387
Molecular Weight (calculated)
22796.4 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.049
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPVSDVGT DDGVVLRWKA VFGSTLQSCV ILGGTRVDRA AAAGPPHAPS SAPPAGDDDG GSIPESLYTN GGLKLRVVWT ISSLIAAATR HYLLREIVKE
101: HPTLERVALT DAGGQGTLSM GRDQLREFRD SPLAAAPAAA ANRTQVPACN MKLRYAPLLE LSDGTRIHGA TLVVIKPIGD AGGKDLDELG AGAFDGPMKE
201: AVAALGKRRA YLLEMNGF
101: HPTLERVALT DAGGQGTLSM GRDQLREFRD SPLAAAPAAA ANRTQVPACN MKLRYAPLLE LSDGTRIHGA TLVVIKPIGD AGGKDLDELG AGAFDGPMKE
201: AVAALGKRRA YLLEMNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.