Factsheet for PGSC0003DMT400024512

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038139
PGSC0003DMT400051713
PGSC0003DMT400056644
PGSC0003DMT400056645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	PGSC0003DMT400038139	AT4G28720.1	21798944
AT1G78100.1	PGSC0003DMT400051713	AT4G28720.1	21798944
AT1G78100.1	PGSC0003DMT400056644	AT4G28720.1	21798944
AT1G78100.1	PGSC0003DMT400056645	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072930.1.1	Tomato	cytosol	98.53	98.53
VIT_18s0001g05310.t01	Wine grape	cytosol	49.12	55.67
AT1G78100.1	Thale cress	cytosol	49.12	50.0
CDX88418	Canola	cytosol	44.71	47.35
CDY26850	Canola	cytosol	41.47	47.32
AT1G22220.1	Thale cress	cytosol	43.53	47.13
Bra015630.1-P	Field mustard	cytosol	44.41	47.04
CDX87476	Canola	cytosol	44.12	46.73
Bra016384.1-P	Field mustard	cytosol	26.76	45.5
Bra008345.1-P	Field mustard	cytosol	41.76	44.8
Bra031373.1-P	Field mustard	cytosol	42.06	44.14
CDY14629	Canola	cytosol	35.0	43.59
CDY41488	Canola	cytosol	40.88	43.57
CDX91668	Canola	cytosol	40.29	42.95
Bra012314.1-P	Field mustard	cytosol	40.0	42.77
CDY00435	Canola	cytosol	39.71	42.45
CDY46634	Canola	cytosol	34.71	42.45
CDY21348	Canola	cytosol	40.0	41.98
CDY38235	Canola	cytosol	39.71	41.67
Zm00001d006501_P001	Maize	cytosol	24.71	38.53
GSMUA_Achr7P21580_001	Banana	cytosol	36.76	35.41
Zm00001d038537_P001	Maize	cytosol	36.76	35.31
EES19721	Sorghum	cytosol	36.76	35.31
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	35.88	35.06
GSMUA_Achr6P32090_001	Banana	cytosol	36.18	34.84
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	37.35	34.51
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	37.65	34.5
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	35.88	34.46
PGSC0003DMT400054525	Potato	cytosol	37.06	34.33
TraesCS1B01G318500.1	Wheat	cytosol	35.88	34.27
TraesCS1A01G307800.1	Wheat	cytosol	35.88	34.27
TraesCS4B01G177100.1	Wheat	cytosol	37.35	34.23
HORVU1Hr1G068570.1	Barley	cytosol	35.29	33.99
TraesCS1D01G307200.1	Wheat	cytosol	35.59	33.99
GSMUA_Achr10P...	Banana	cytosol	35.29	33.9
TraesCS3B01G368000.1	Wheat	cytosol	35.29	33.9
HORVU4Hr1G052070.1	Barley	cytosol	36.47	33.79
HORVU0Hr1G030450.1	Barley	cytosol	35.0	33.71
TraesCS3D01G329900.1	Wheat	cytosol	35.29	33.71
GSMUA_Achr3P18400_001	Banana	cytosol	35.88	33.61
Os01t0812200-01	Rice	cytosol	34.71	33.43
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	35.29	33.43
Os03t0321300-01	Rice	cytosol	37.65	33.33
EES01639	Sorghum	cytosol	34.41	33.05
TraesCS3D01G518800.1	Wheat	cytosol	30.59	32.81
EER94941	Sorghum	cytosol, peroxisome, plastid	36.47	32.63
Zm00001d043016_P001	Maize	plastid	24.41	32.55
PGSC0003DMT400049024	Potato	cytosol	37.06	32.39
Zm00001d043125_P001	Maize	cytosol	33.24	32.29
Zm00001d028957_P001	Maize	cytosol	32.65	31.9
Zm00001d047573_P001	Maize	plastid	39.12	30.57
CDY32130	Canola	cytosol	23.24	29.15
PGSC0003DMT400097155	Potato	cytosol	29.71	28.86
Os05t0490300-01	Rice	mitochondrion	36.47	27.56
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.53	18.12
PGSC0003DMT400002031	Potato	extracellular	7.65	16.25
GSMUA_Achr6P15980_001	Banana	mitochondrion	35.0	15.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400024512	EnsemblPlantsGene:PGSC0003DMG400009478	EntrezGene:102601177	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PFscan:PS50181	PGSC:PGSC0003DMG400009478
RefSeq:XP_006353995.1	RefSeq:XP_006353996.1	RefSeq:XP_006353997.1	RefSeq:XP_006353998.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0002968F89	UniProt:M1AK96	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009478]

Coordinates

chr4:+:62913771..62916439

Molecular Weight (calculated)

37610.9 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.328

Length

340 amino acids

Sequence
(BLAST)

001: MEFESDHSDG FDRLPDPLIH LMFNQISDIK TLIRCRSVSK RFNSLVPQAD SLLLRVDRVI SATDSDDDDD SFLIAFLRSI IKSLHHLVSP SKALPSPARS
101: QNSPAQILRE FERIRNLQIE LPSGDLRLEK GTTIRWKADF GKTLKSCVIL GFRSGDGGGG EAEFGGGAGA GLKMRVVWTI SALIAASARH YMMVEVVNEH
201: KELENLVIKD RDDEGKVVMD KKGLKECRES QGEGEEAEVN NASSGNGVGL WWRNNRTTVP AVRMRMWHEA RMELSGGMKM VGATLVVVRP TNGGGERSEV
301: EEQNGDVGLA LGAFGEDAVY CEAVERLLKS RSYILEMNSF

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.