Factsheet for PGSC0003DMT400038139

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
mitochondrion 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28720.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT4G28720.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT4G28720.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G28720.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008050.2.1	Tomato	peroxisome	95.83	95.13
PGSC0003DMT400051713	Potato	cytosol	83.58	81.97
PGSC0003DMT400056644	Potato	cytosol, endoplasmic reticulum, peroxisome	82.11	80.72
VIT_07s0005g04800.t01	Wine grape	cytosol	76.23	73.35
KRG95789	Soybean	cytosol, peroxisome, plastid	72.79	70.05
CDY14230	Canola	cytosol	68.14	70.03
CDY72645	Canola	cytosol	58.58	69.88
KRH19661	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.3	69.74
CDY14900	Canola	cytosol	66.18	69.59
KRH67507	Soybean	cytosol, peroxisome, plastid	72.3	69.58
Bra011055.1-P	Field mustard	cytosol	72.55	69.48
Bra036002.1-P	Field mustard	cytosol, peroxisome, plastid	67.89	69.42
CDY06876	Canola	cytosol	72.3	69.25
CDX97452	Canola	cytosol	72.3	69.25
CDY35214	Canola	cytosol	72.3	69.25
KRH32274	Soybean	cytosol	71.32	68.79
AT4G28720.1	Thale cress	cytosol	71.81	68.78
Bra010354.1-P	Field mustard	cytosol	71.57	68.54
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	56.62	68.34
PGSC0003DMT400056645	Potato	cytosol, peroxisome, plastid	41.42	68.15
PGSC0003DMT400030255	Potato	cytosol	69.85	68.02
AT1G04180.1	Thale cress	cytosol	70.1	67.93
GSMUA_Achr11P...	Banana	cytosol	58.09	67.91
GSMUA_Achr1P03360_001	Banana	peroxisome	57.11	67.73
CDY18209	Canola	cytosol, peroxisome, plastid	69.85	67.54
CDX89837	Canola	cytosol, peroxisome, plastid	69.36	67.38
Bra015293.1-P	Field mustard	cytosol, peroxisome, plastid	69.36	67.38
AT5G43890.1	Thale cress	cytosol	69.36	66.75
CDY10073	Canola	cytosol, peroxisome, plastid	68.38	66.27
Bra033703.1-P	Field mustard	cytosol, peroxisome, plastid	69.12	66.2
GSMUA_Achr8P12830_001	Banana	cytosol, golgi, peroxisome	58.82	66.12
CDY32533	Canola	cytosol	68.38	66.11
CDY22326	Canola	cytosol	68.87	65.96
Bra032524.1-P	Field mustard	cytosol	68.14	65.88
CDX94734	Canola	cytosol, peroxisome, plastid	68.63	65.73
GSMUA_Achr4P25050_001	Banana	cytosol	60.78	65.61
GSMUA_Achr5P20550_001	Banana	cytosol, peroxisome, plastid	61.03	65.53
CDY69333	Canola	cytosol	66.18	64.75
GSMUA_Achr1P24210_001	Banana	cytosol	58.58	63.06
GSMUA_Achr2P04250_001	Banana	cytosol	57.84	62.27
TraesCS2A01G011500.1	Wheat	plastid	63.73	62.2
GSMUA_AchrUn_...	Banana	mitochondrion	60.05	62.18
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	57.35	62.07
Os04t0128900-01	Rice	peroxisome	63.48	61.81
TraesCS2D01G012100.1	Wheat	cytosol, peroxisome, plastid	63.48	61.52
TraesCS2B01G010100.2	Wheat	cytosol, peroxisome, plastid	63.24	61.28
EES11777	Sorghum	cytosol, peroxisome, plastid	62.75	60.66
Zm00001d004467_P001	Maize	peroxisome, plasma membrane, plastid	61.03	59.14
Os07t0437000-01	Rice	mitochondrion	56.62	58.04
TraesCS2B01G562800.1	Wheat	mitochondrion	58.58	57.45
TraesCS2A01G533200.1	Wheat	mitochondrion	58.58	57.45
TraesCS2D01G535100.1	Wheat	mitochondrion	58.33	57.21
PGSC0003DMT400067103	Potato	cytosol	46.81	57.19
PGSC0003DMT400037628	Potato	cytosol	58.33	57.07
Zm00001d005439_P001	Maize	plastid	54.66	56.03
HORVU5Hr1G050630.3	Barley	mitochondrion, plasma membrane	46.81	55.2
TraesCS4A01G313200.1	Wheat	mitochondrion	55.15	54.88
HORVU2Hr1G001820.1	Barley	plastid	63.24	54.78
HORVU5Hr1G125560.2	Barley	mitochondrion	55.15	54.35
KXG35000	Sorghum	plastid	56.37	54.12
Zm00001d025005_P002	Maize	cytosol, peroxisome, plastid	56.13	50.22
HORVU2Hr1G116980.1	Barley	plastid	58.33	49.79
EES15155	Sorghum	peroxisome	52.7	48.53
TraesCS5B01G566700.1	Wheat	golgi, mitochondrion, plasma membrane	55.15	47.87
Zm00001d005602_P001	Maize	endoplasmic reticulum	24.02	47.8
PGSC0003DMT400092778	Potato	extracellular, peroxisome, plasma membrane	37.75	46.25
TraesCSU01G065000.1	Wheat	cytosol, endoplasmic reticulum, golgi	24.02	44.95
PGSC0003DMT400094923	Potato	extracellular	41.42	44.36
PGSC0003DMT400097007	Potato	cytosol, peroxisome, plastid	41.91	44.3
PGSC0003DMT400090184	Potato	cytosol	24.26	43.04
PGSC0003DMT400088054	Potato	cytosol	32.35	42.17
PGSC0003DMT400085760	Potato	cytosol, nucleus, peroxisome	22.79	38.59
OQU88910	Sorghum	plastid	19.85	35.68
Zm00001d019527_P005	Maize	peroxisome	36.27	34.42
HORVU7Hr1G007860.1	Barley	cytosol	48.77	23.95
TraesCS7D01G038500.1	Wheat	cytosol, nucleus, plasma membrane	47.55	23.8

Protein Annotations

EntrezGene:102584151	MapMan:11.2.1.1.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0004499	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	UniProt:M1B6D8	PFAM:PF00743
EnsemblPlantsGene:PGSC0003DMG400014707	PGSC:PGSC0003DMG400014707	EnsemblPlants:PGSC0003DMT400038139	PIRSF:PIRSF000332	PRINTS:PR00368	PRINTS:PR00469
PANTHER:PTHR43539	PANTHER:PTHR43539:SF2	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	TMHMM:TMhelix	UniParc:UPI0002459386
RefSeq:XP_006364550.1	SEG:seg	:	:	:	:

Description

Flavin monooxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400014707]

Coordinates

chr6:+:1991818..1994829

Molecular Weight (calculated)

45749.0 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.080

Length

408 amino acids

Sequence
(BLAST)

001: MVSFNGQDLF SSRCVWVNGP VIVGAGPSGL AVGACLKEQG IPFVILEKSD CIASLWQKKT YNRLKLHLPK QFCQLPKFPF PQHYPEYPTK KQFIDYLESY
101: ARKFDINPMF NECVQFAKYD QICKLWRVKT ISPNGLEVEY ICQWLVVATG ENAEKVVPNI EGLKEFGGEV IHACDYKSGE KFSGKKVLVV GCGNSGMEVS
201: LDLSNHNAHP SLVCRSSVHV LPREIFGKSI FELAMFMMKW LPLWLVDKIL LILTWFILGN IEKYGLKRPK IGPLELKNTQ GKTPVLDIGA LEKIRSRKIN
301: VVPGIKKFSC GTVELVNGEK LEIDSVVLAT GYCSNVPFWL KESEFFSKNG FPKAPFPNSW KGKSGLYAVG FTRRGLSGAS ADAIQIAQDI TKAYNEDIMQ
401: KKQKISTL

Best Arabidopsis Sequence Match ( AT4G28720.1 )
(BLAST)

001: MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID
101: YLESYATRFE INPKFNECVQ TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH ACDYKSGEKF AGKKVLVVGC
201: GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE
301: KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG
401: SVWQLETKQP TKRSRGSLRR CISQQF

Arabidopsis Description

YUC8Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178V2K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.