Factsheet for PGSC0003DMT400056644

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28720.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT4G28720.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT4G28720.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G28720.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g064160.2.1	Tomato	cytosol	96.39	96.39
PGSC0003DMT400051713	Potato	cytosol	85.78	85.58
PGSC0003DMT400038139	Potato	peroxisome	80.72	82.11
PGSC0003DMT400056645	Potato	cytosol, peroxisome, plastid	45.3	75.81
VIT_07s0005g04800.t01	Wine grape	cytosol	75.42	73.82
KRH67507	Soybean	cytosol, peroxisome, plastid	74.22	72.64
KRG95789	Soybean	cytosol, peroxisome, plastid	73.98	72.41
CDY14900	Canola	cytosol	66.99	71.65
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	58.07	71.3
CDY14230	Canola	cytosol	68.19	71.28
Bra036002.1-P	Field mustard	cytosol, peroxisome, plastid	68.43	71.18
CDY72645	Canola	cytosol	58.55	71.05
KRH19661	Soybean	cytosol, endoplasmic reticulum, peroxisome	72.05	70.69
CDY06876	Canola	cytosol	72.53	70.66
Bra011055.1-P	Field mustard	cytosol	72.53	70.66
CDY35214	Canola	cytosol	72.53	70.66
KRH32274	Soybean	cytosol	71.57	70.21
AT5G43890.1	Thale cress	cytosol	71.57	70.05
CDX97452	Canola	cytosol	71.81	69.95
Bra010354.1-P	Field mustard	cytosol	71.81	69.95
AT1G04180.1	Thale cress	cytosol	70.6	69.6
AT4G28720.1	Thale cress	cytosol	71.33	69.48
CDX89837	Canola	cytosol, peroxisome, plastid	70.12	69.29
Bra015293.1-P	Field mustard	cytosol, peroxisome, plastid	70.12	69.29
GSMUA_Achr11P...	Banana	cytosol	58.07	69.05
CDX94734	Canola	cytosol, peroxisome, plastid	70.84	69.01
Bra033703.1-P	Field mustard	cytosol, peroxisome, plastid	70.84	69.01
CDY18209	Canola	cytosol, peroxisome, plastid	70.12	68.96
CDY22326	Canola	cytosol	70.6	68.78
CDY69333	Canola	cytosol	68.92	68.59
CDY32533	Canola	cytosol	69.16	68.01
Bra032524.1-P	Field mustard	cytosol	68.92	67.77
CDY10073	Canola	cytosol, peroxisome, plastid	68.19	67.22
GSMUA_Achr5P20550_001	Banana	cytosol, peroxisome, plastid	61.45	67.11
GSMUA_Achr1P03360_001	Banana	peroxisome	55.42	66.86
PGSC0003DMT400030255	Potato	cytosol	67.47	66.83
GSMUA_Achr8P12830_001	Banana	cytosol, golgi, peroxisome	58.31	66.67
GSMUA_Achr1P24210_001	Banana	cytosol	60.24	65.96
GSMUA_Achr4P25050_001	Banana	cytosol	60.0	65.87
TraesCS2A01G011500.1	Wheat	plastid	66.02	65.55
TraesCS2D01G012100.1	Wheat	cytosol, peroxisome, plastid	66.27	65.32
Os04t0128900-01	Rice	peroxisome	65.54	64.92
TraesCS2B01G010100.2	Wheat	cytosol, peroxisome, plastid	65.54	64.61
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	58.55	64.46
GSMUA_AchrUn_...	Banana	mitochondrion	60.48	63.71
GSMUA_Achr2P04250_001	Banana	cytosol	57.83	63.32
EES11777	Sorghum	cytosol, peroxisome, plastid	64.1	63.03
Zm00001d004467_P001	Maize	peroxisome, plasma membrane, plastid	63.37	62.47
TraesCS2A01G533200.1	Wheat	mitochondrion	60.0	59.86
TraesCS2B01G562800.1	Wheat	mitochondrion	60.0	59.86
TraesCS2D01G535100.1	Wheat	mitochondrion	59.76	59.62
Os07t0437000-01	Rice	mitochondrion	56.14	58.54
Zm00001d005439_P001	Maize	plastid	55.9	58.29
HORVU2Hr1G001820.1	Barley	plastid	66.02	58.17
PGSC0003DMT400067103	Potato	cytosol	46.51	57.78
TraesCS4A01G313200.1	Wheat	mitochondrion	56.87	57.56
HORVU5Hr1G050630.3	Barley	mitochondrion, plasma membrane	47.95	57.51
HORVU5Hr1G125560.2	Barley	mitochondrion	57.11	57.25
PGSC0003DMT400037628	Potato	cytosol	55.9	55.64
KXG35000	Sorghum	plastid	55.9	54.59
HORVU2Hr1G116980.1	Barley	plastid	59.76	51.88
Zm00001d025005_P002	Maize	cytosol, peroxisome, plastid	56.14	51.1
TraesCS5B01G566700.1	Wheat	golgi, mitochondrion, plasma membrane	57.83	51.06
EES15155	Sorghum	peroxisome	52.77	49.44
Zm00001d005602_P001	Maize	endoplasmic reticulum	24.1	48.78
TraesCSU01G065000.1	Wheat	cytosol, endoplasmic reticulum, golgi	24.82	47.25
PGSC0003DMT400092778	Potato	extracellular, peroxisome, plasma membrane	35.42	44.14
PGSC0003DMT400094923	Potato	extracellular	39.76	43.31
PGSC0003DMT400097007	Potato	cytosol, peroxisome, plastid	39.52	42.49
PGSC0003DMT400090184	Potato	cytosol	23.37	42.17
PGSC0003DMT400088054	Potato	cytosol	30.6	40.58
OQU88910	Sorghum	plastid	20.96	38.33
PGSC0003DMT400085760	Potato	cytosol, nucleus, peroxisome	21.93	37.76
Zm00001d019527_P005	Maize	peroxisome	38.31	36.98
TraesCS7D01G038500.1	Wheat	cytosol, nucleus, plasma membrane	51.33	26.14
HORVU7Hr1G007860.1	Barley	cytosol	51.33	25.63

Protein Annotations

EntrezGene:102582086	MapMan:11.2.1.1.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0004499	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	UniProt:M1BZQ3	PFAM:PF00743
EnsemblPlantsGene:PGSC0003DMG400022025	PGSC:PGSC0003DMG400022025	EnsemblPlants:PGSC0003DMT400056644	PIRSF:PIRSF000332	PRINTS:PR00368	PRINTS:PR00469
PANTHER:PTHR43539	PANTHER:PTHR43539:SF2	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	TMHMM:TMhelix	UniParc:UPI0002962C22
RefSeq:XP_006350286.1	SEG:seg	:	:	:	:

Description

Flavin monooxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400022025]

Coordinates

chr9:-:45674186..45676122

Molecular Weight (calculated)

46506.6 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.151

Length

415 amino acids

Sequence
(BLAST)

001: MFNFSDNDMF ARRCVWVNGP VIVGAGPSGL AVGACLKEQG VPCVILERSD CIASLWQKRT YDRLKLHLPK QFCQLPKFPF PEHYPEYPSK RQFIEYLESY
101: ARKFDLSPQF NECVQSAKYD EFCRLWRVKT VSADGVEVEY ICQWLVVATG ENAERVVPEI DGLKEFGGEV IHACDYKSGE KFRGKKVVVV GCGNSGMEVS
201: LDLCNHDAQP SMVCRSAVHI LPREIFGKST FELAMLLMTW LPLWLVDKIL LILTWFILGD IEKYGLKRPT TGPLQLKNSQ GKTPVLDIGA LEKIRAGKVK
301: VVAGIKKFSC GTVELVTGEK LEVDSVVLAT GYCSNVPSWL QESEFFSKNG YPKAQFPNNW KGKSGLYAVG FTKRGLAGAS ADAIRIAKDI GKVHKEDLKQ
401: KKQKVPTHRR CISTF

Best Arabidopsis Sequence Match ( AT4G28720.1 )
(BLAST)

001: MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID
101: YLESYATRFE INPKFNECVQ TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH ACDYKSGEKF AGKKVLVVGC
201: GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE
301: KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG
401: SVWQLETKQP TKRSRGSLRR CISQQF

Arabidopsis Description

YUC8Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178V2K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.