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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28720.1 CDX78905 AT4G19030.1 21798944
AT4G28720.1 CDX98596 AT4G19030.1 21798944
AT4G28720.1 CDX99411 AT4G19030.1 21798944
AT4G28720.1 CDY01565 AT4G19030.1 21798944
AT4G28720.1 CDX70995 AT5G22290.1 21798944
AT4G28720.1 CDX88803 AT5G22290.1 21798944
AT4G28720.1 CDX92368 AT5G22290.1 21798944
AT4G28720.1 CDY09128 AT5G22290.1 21798944
AT4G28720.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14230 Canola cytosol 91.31 97.98
Bra010354.1-P Field mustard cytosol 97.42 97.42
CDY72645 Canola cytosol 78.17 97.37
CDY35214 Canola cytosol 92.02 92.02
CDY06876 Canola cytosol 91.78 91.78
AT4G28720.1 Thale cress cytosol 89.67 89.67
KRG95789 Soybean cytosol, peroxisome, plastid 76.29 76.65
KRH67507 Soybean cytosol, peroxisome, plastid 76.06 76.42
KRH19661 Soybean cytosol, endoplasmic reticulum, peroxisome 73.94 74.47
KRH32274 Soybean cytosol 73.71 74.23
VIT_07s0005g04800.t01 Wine grape cytosol 73.71 74.06
CDY14900 Canola cytosol 67.14 73.71
Solyc06g083700.2.1 Tomato cytosol 71.6 73.32
PGSC0003DMT400051713 Potato cytosol 71.36 73.08
CDX89837 Canola cytosol, peroxisome, plastid 71.83 72.86
CDY18209 Canola cytosol, peroxisome, plastid 72.07 72.75
CDX94734 Canola cytosol, peroxisome, plastid 72.54 72.54
CDY22326 Canola cytosol 72.54 72.54
PGSC0003DMT400038139 Potato peroxisome 69.25 72.3
CDY32533 Canola cytosol 71.36 72.04
CDY10073 Canola cytosol, peroxisome, plastid 71.13 71.97
PGSC0003DMT400056644 Potato cytosol, endoplasmic reticulum, peroxisome 69.95 71.81
Solyc09g064160.2.1 Tomato cytosol 69.72 71.57
Solyc06g008050.2.1 Tomato peroxisome 69.01 71.53
CDY69333 Canola cytosol 69.72 71.22
GSMUA_Achr11P... Banana cytosol, mitochondrion, plastid 55.16 69.53
GSMUA_Achr8P12830_001 Banana cytosol, golgi, peroxisome 58.22 68.32
GSMUA_Achr5P20550_001 Banana cytosol, peroxisome, plastid 59.62 66.84
GSMUA_Achr11P... Banana cytosol 54.46 66.48
TraesCS2A01G011500.1 Wheat plastid 64.32 65.55
GSMUA_Achr1P03360_001 Banana peroxisome 52.82 65.41
Os04t0128900-01 Rice peroxisome 64.08 65.16
CDY17153 Canola peroxisome 66.67 65.14
TraesCS2B01G010100.2 Wheat cytosol, peroxisome, plastid 64.32 65.08
TraesCS2D01G012100.1 Wheat cytosol, peroxisome, plastid 64.08 64.85
CDY19472 Canola cytosol, peroxisome, plastid 65.96 64.45
Zm00001d004467_P001 Maize peroxisome, plasma membrane, plastid 63.38 64.13
CDX89807 Canola plastid 65.49 63.99
CDY61147 Canola plastid 65.26 63.76
EES11777 Sorghum cytosol, peroxisome, plastid 63.15 63.74
CDY53200 Canola golgi, peroxisome, plastid 64.32 63.72
GSMUA_Achr4P25050_001 Banana cytosol 56.34 63.49
GSMUA_Achr1P24210_001 Banana cytosol 55.87 62.8
PGSC0003DMT400056645 Potato cytosol, peroxisome, plastid 36.15 62.1
GSMUA_Achr11P... Banana cytosol, mitochondrion 54.93 62.07
GSMUA_AchrUn_... Banana mitochondrion 57.04 61.68
GSMUA_Achr2P04250_001 Banana cytosol 54.69 61.48
Os07t0437000-01 Rice mitochondrion 56.34 60.3
TraesCS2A01G533200.1 Wheat mitochondrion 58.69 60.1
TraesCS2B01G562800.1 Wheat mitochondrion 58.22 59.62
TraesCS2D01G535100.1 Wheat mitochondrion 57.98 59.38
HORVU5Hr1G050630.3 Barley mitochondrion, plasma membrane 47.89 58.96
Zm00001d005439_P001 Maize plastid 54.93 58.79
HORVU2Hr1G001820.1 Barley plastid 63.62 57.54
TraesCS4A01G313200.1 Wheat mitochondrion 54.93 57.07
HORVU5Hr1G125560.2 Barley mitochondrion 55.16 56.76
CDX97092 Canola cytosol 54.46 56.45
CDY71836 Canola plastid 47.65 55.92
CDY50808 Canola peroxisome 45.07 55.81
KXG35000 Sorghum plastid 54.46 54.59
CDX85720 Canola peroxisome 52.58 54.5
CDY39891 Canola plastid 52.35 54.39
CDY23330 Canola plastid 52.11 54.15
Zm00001d025005_P002 Maize cytosol, peroxisome, plastid 56.81 53.07
CDX75253 Canola cytosol 51.64 52.63
CDX68858 Canola plastid 51.88 52.62
HORVU2Hr1G116980.1 Barley plastid 58.45 52.09
CDY54895 Canola cytosol, nucleus, peroxisome 53.52 51.47
CDY19798 Canola cytosol, nucleus, peroxisome 53.99 51.45
Zm00001d005602_P001 Maize endoplasmic reticulum 24.65 51.22
CDX80530 Canola cytosol, nucleus, peroxisome 53.05 51.13
CDY05502 Canola cytosol, nucleus, peroxisome 53.05 51.02
CDY62422 Canola cytosol, nucleus, peroxisome 52.35 50.45
EES15155 Sorghum peroxisome 51.88 49.89
TraesCS5B01G566700.1 Wheat golgi, mitochondrion, plasma membrane 54.93 49.79
TraesCSU01G065000.1 Wheat cytosol, endoplasmic reticulum, golgi 24.41 47.71
CDY65511 Canola cytosol 36.15 45.83
CDY50238 Canola cytosol 35.68 45.65
CDY71529 Canola cytosol, peroxisome 32.16 45.36
CDX87078 Canola extracellular 23.0 45.16
CDY40617 Canola cytosol, extracellular, peroxisome 39.2 43.38
CDX93705 Canola cytosol, extracellular, peroxisome 39.2 43.38
CDX93703 Canola cytosol, extracellular, peroxisome 39.2 43.38
OQU88910 Sorghum plastid 20.89 39.21
Zm00001d019527_P005 Maize peroxisome 37.79 37.44
TraesCS7D01G038500.1 Wheat cytosol, nucleus, plasma membrane 50.7 26.5
HORVU7Hr1G007860.1 Barley cytosol 50.47 25.87
Protein Annotations
MapMan:11.2.1.1.2Gene3D:3.50.50.60GO:A0A078E8T9EnsemblPlants:CDX97452ProteinID:CDX97452ProteinID:CDX97452.1
InterPro:FAD/NAD-bd_sfInterPro:Flavin_mOaseInterPro:Flavin_mOase-likeGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004499GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0050660
GO:GO:0050661GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00104621001InterPro:IPR036188PFAM:PF00743PIRSF:PIRSF000332
PRINTS:PR00368PRINTS:PR00469PANTHER:PTHR43539PANTHER:PTHR43539:SF2InterPro:Pyridine_nuc-diS_OxRdtase_2SUPFAM:SSF51905
TMHMM:TMhelixUniParc:UPI0004EB8A7BSEG:seg:::
Description
BnaC08g13170D
Coordinates
chrLK031899:+:808465..809939
Molecular Weight (calculated)
47799.0 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.189
Length
426 amino acids
Sequence
(BLAST)
001: MESMVRLMDQ EQEVTTTTNR CIWVNGPVIV GAGPSGLATA ACLREQNVPF VVLERADCIA SLWQNRTYDR LKLHLPKKFC QLPKMPFPES FPEYPTKRQF
101: IDYLESYASR FDINPKFNEC VQTARFDETS GLWRVKTVSS TESTRTEVEY ICRWLVVATG ENAERVVPEI DGLDEFTGEV IHACDYKSGE KFAGKKVLVV
201: GCGNSGMEVS LDLANHFAKP SMVVRSSFHV MPREVMGKST FELAMKMLAW LPLWLVDKIL LVLCWLVLGN IEKYGLKRPE MGPMALKSVK GKTPVLDIGA
301: LEKIRSGKIN VVPGVKRFDG NRVELVNGEQ LEIDSVVLAT GYRSNVPYWL QESEFFAKNG FPKAANSGWK GRTGLYAVGF TRRGLSGVSM DAVKIAQDIG
401: SVWKLETKQP SKRSTASHRR CISQQF
Best Arabidopsis Sequence Match ( AT4G28720.1 )
(BLAST)
001: MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID
101: YLESYATRFE INPKFNECVQ TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH ACDYKSGEKF AGKKVLVVGC
201: GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE
301: KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG
401: SVWQLETKQP TKRSRGSLRR CISQQF
Arabidopsis Description
YUC8Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178V2K9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.