CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28720.1	KRH11076	AT4G19030.1	21798944
AT4G28720.1	KRH21197	AT4G19030.1	21798944
AT4G28720.1	KRH42923	AT4G19030.1	21798944
AT4G28720.1	KRH42926	AT4G19030.1	21798944
AT4G28720.1	KRH45251	AT4G19030.1	21798944
AT4G28720.1	KRH59035	AT4G19030.1	21798944
AT4G28720.1	KRH59036	AT4G19030.1	21798944
AT4G28720.1	KRH22653	AT5G22290.1	21798944
AT4G28720.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95789	Soybean	cytosol, peroxisome, plastid	96.23	96.23
KRH32274	Soybean	cytosol	84.91	85.11
KRH19661	Soybean	cytosol, endoplasmic reticulum, peroxisome	84.67	84.87
VIT_07s0005g04800.t01	Wine grape	cytosol	77.83	77.83
Bra011055.1-P	Field mustard	cytosol	78.07	77.7
CDY35214	Canola	cytosol	78.07	77.7
CDY06876	Canola	cytosol	77.83	77.46
AT4G28720.1	Thale cress	cytosol	77.36	77.0
CDY14230	Canola	cytosol	71.46	76.32
Bra010354.1-P	Field mustard	cytosol	76.65	76.29
CDX97452	Canola	cytosol	76.42	76.06
CDY72645	Canola	cytosol	61.32	76.02
Solyc09g064160.2.1	Tomato	cytosol	72.88	74.46
PGSC0003DMT400056644	Potato	cytosol, endoplasmic reticulum, peroxisome	72.64	74.22
Solyc06g083700.2.1	Tomato	cytosol	72.64	74.04
PGSC0003DMT400051713	Potato	cytosol	72.64	74.04
GSMUA_Achr5P20550_001	Banana	cytosol, peroxisome, plastid	66.04	73.68
AT5G43890.1	Thale cress	cytosol	73.35	73.35
GSMUA_Achr11P...	Banana	cytosol	60.14	73.07
Bra036002.1-P	Field mustard	cytosol, peroxisome, plastid	68.4	72.68
CDY14900	Canola	cytosol	66.51	72.68
CDX89837	Canola	cytosol, peroxisome, plastid	71.7	72.38
Bra015293.1-P	Field mustard	cytosol, peroxisome, plastid	71.7	72.38
PGSC0003DMT400038139	Potato	peroxisome	69.58	72.3
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	57.55	72.19
CDY18209	Canola	cytosol, peroxisome, plastid	71.7	72.04
Solyc06g008050.2.1	Tomato	peroxisome	69.81	72.02
Bra033703.1-P	Field mustard	cytosol, peroxisome, plastid	72.17	71.83
AT1G04180.1	Thale cress	cytosol	71.23	71.73
CDY22326	Canola	cytosol	71.93	71.6
CDX94734	Canola	cytosol, peroxisome, plastid	71.93	71.6
CDY10073	Canola	cytosol, peroxisome, plastid	70.99	71.5
CDY32533	Canola	cytosol	70.75	71.09
Bra032524.1-P	Field mustard	cytosol	70.52	70.85
GSMUA_Achr8P12830_001	Banana	cytosol, golgi, peroxisome	60.61	70.8
CDY69333	Canola	cytosol	69.58	70.74
KRG90286	Soybean	cytosol, peroxisome, plastid	72.88	70.39
KRH33524	Soybean	cytosol, peroxisome, plastid	72.88	70.07
GSMUA_Achr1P03360_001	Banana	peroxisome	56.6	69.77
GSMUA_Achr4P25050_001	Banana	cytosol	61.32	68.78
Os04t0128900-01	Rice	peroxisome	66.98	67.78
Zm00001d004467_P001	Maize	peroxisome, plasma membrane, plastid	66.98	67.46
TraesCS2A01G011500.1	Wheat	plastid	66.27	67.22
GSMUA_Achr1P24210_001	Banana	cytosol	59.91	67.02
EES11777	Sorghum	cytosol, peroxisome, plastid	66.51	66.82
GSMUA_Achr2P04250_001	Banana	cytosol	59.67	66.75
TraesCS2B01G010100.2	Wheat	cytosol, peroxisome, plastid	66.04	66.51
TraesCS2D01G012100.1	Wheat	cytosol, peroxisome, plastid	65.8	66.27
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	58.25	65.52
GSMUA_AchrUn_...	Banana	mitochondrion	60.85	65.48
PGSC0003DMT400056645	Potato	cytosol, peroxisome, plastid	36.79	62.9
Os07t0437000-01	Rice	mitochondrion	58.02	61.81
Zm00001d005439_P001	Maize	plastid	57.55	61.31
TraesCS2A01G533200.1	Wheat	mitochondrion	59.91	61.06
TraesCS2B01G562800.1	Wheat	mitochondrion	59.67	60.82
TraesCS2D01G535100.1	Wheat	mitochondrion	59.2	60.34
HORVU5Hr1G050630.3	Barley	mitochondrion, plasma membrane	48.35	59.25
HORVU2Hr1G001820.1	Barley	plastid	65.8	59.24
KXG35000	Sorghum	plastid	58.49	58.35
TraesCS4A01G313200.1	Wheat	mitochondrion	56.13	58.05
KRH16221	Soybean	cytosol, nucleus, peroxisome	58.96	57.34
HORVU5Hr1G125560.2	Barley	mitochondrion	55.9	57.25
KRH62005	Soybean	cytosol, nucleus, peroxisome, plastid	58.73	56.98
KRH04824	Soybean	cytosol, nucleus, peroxisome	58.73	56.85
KRH16035	Soybean	cytosol	51.89	56.27
KRH05083	Soybean	cytosol	53.77	56.16
KRH60285	Soybean	cytosol	54.48	55.8
KRH61831	Soybean	cytosol	52.83	55.31
KRH52661	Soybean	cytosol, nucleus, peroxisome, plastid	57.31	55.23
Zm00001d005602_P001	Maize	endoplasmic reticulum	26.65	55.12
Zm00001d025005_P002	Maize	cytosol, peroxisome, plastid	59.2	55.04
KRH52507	Soybean	cytosol	51.65	54.48
KRH48393	Soybean	peroxisome	54.72	54.33
KRH41577	Soybean	cytosol, nucleus, peroxisome	53.3	54.07
KRH39284	Soybean	peroxisome	54.72	53.83
HORVU2Hr1G116980.1	Barley	plastid	59.43	52.72
TraesCSU01G065000.1	Wheat	cytosol, endoplasmic reticulum, golgi	26.18	50.92
EES15155	Sorghum	peroxisome	53.07	50.79
TraesCS5B01G566700.1	Wheat	golgi, mitochondrion, plasma membrane	55.9	50.43
KRH68103	Soybean	cytosol	41.51	45.83
KRG96368	Soybean	cytosol	41.98	45.64
KRH53357	Soybean	extracellular	40.57	43.0
KRH64052	Soybean	vacuole	38.21	42.52
KRH53890	Soybean	cytoskeleton, cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	37.26	41.47
OQU88910	Sorghum	plastid	20.99	39.21
KRH64572	Soybean	cytosol, endoplasmic reticulum, peroxisome	40.09	39.17
Zm00001d019527_P005	Maize	peroxisome	37.74	37.21
TraesCS7D01G038500.1	Wheat	cytosol, nucleus, plasma membrane	52.36	27.24
HORVU7Hr1G007860.1	Barley	cytosol	53.3	27.2

Protein Annotations

EntrezGene:100796169	MapMan:11.2.1.1.2	Gene3D:3.50.50.60	EMBL:ACUP02002064	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase
InterPro:Flavin_mOase-like	EnsemblPlantsGene:GLYMA_03G169600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0004499	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660
GO:GO:0050661	GO:GO:0055114	UniProt:I1JPA9	InterPro:IPR036188	EnsemblPlants:KRH67507	ProteinID:KRH67507
ProteinID:KRH67507.1	PFAM:PF00743	PIRSF:PIRSF000332	PRINTS:PR00368	PRINTS:PR00469	PANTHER:PTHR43539
PANTHER:PTHR43539:SF2	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	UniParc:UPI000233A79C	:	:

Description

hypothetical protein

Coordinates

chr3:+:38418773..38421098

Molecular Weight (calculated)

47695.7 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.213

Length

424 amino acids

Sequence
(BLAST)

001: MENLFRLVDN EDLFSRRCIW VNGPIIVGAG PSGLATAACL REQGVPFMVL ERADCIASLW QKRTYDRLKL HLPKQFCQLP KLPFPEDFPE YPTKKQFIEY
101: LESYAKHFEI NPQFNECVQS ARYDETSGLW RVKTVSSSSG AARGEVEYIC RWLVVATGEN AECVMPEIEG LSEFKGDVIH ACDYKSGERF RGKKVLVVGC
201: GNSGMELSLD LCNHHSSPSM VVRSSVHVLP REVFGISTFE LAVMLLQWLP LWLVDKILLI LAWFVLGNIE KLGLKRPSKG PLEMKNRKGK TPVLDIGALE
301: RIRSGDIEVV PGIKRFNNGE VEFINGEKLD IDAIVLATGY RSNVPSWLQE GEFFSKNGYP KMPFPHGWKG NAGLYAVGFT KRGLSGASSD AVKIAQDIGQ
401: VWKNETKQKK QRTTACHRRC ISQF

Best Arabidopsis Sequence Match ( AT4G28720.1 )
(BLAST)

001: MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID
101: YLESYATRFE INPKFNECVQ TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH ACDYKSGEKF AGKKVLVVGC
201: GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE
301: KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG
401: SVWQLETKQP TKRSRGSLRR CISQQF

Arabidopsis Description

YUC8Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178V2K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.