Factsheet for PGSC0003DMT400054525

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070480.2.1	Tomato	cytosol	50.68	96.88
PGSC0003DMT400049024	Potato	cytosol	77.93	73.52
KRH21091	Soybean	cytosol	71.39	67.7
KRH11156	Soybean	cytosol, nucleus, vacuole	70.03	66.75
CDX99890	Canola	cytosol, golgi, nucleus	66.48	66.48
VIT_10s0003g03880.t01	Wine grape	cytosol	71.66	65.91
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	66.48	65.24
CDY26286	Canola	cytosol, nucleus, vacuole	66.48	65.24
AT1G30200.2	Thale cress	cytosol	66.21	64.12
GSMUA_Achr4P22940_001	Banana	cytosol	58.31	57.37
GSMUA_Achr4P31500_001	Banana	cytosol	50.95	56.16
GSMUA_Achr2P17340_001	Banana	cytosol	54.22	55.9
GSMUA_Achr7P07910_001	Banana	cytosol	57.49	55.09
GSMUA_Achr5P02540_001	Banana	cytosol	50.14	54.93
Os01t0770400-01	Rice	cytosol	56.4	52.27
Os05t0510400-02	Rice	cytosol	57.77	51.46
TraesCS3A01G296700.1	Wheat	cytosol	55.31	50.62
TraesCS3B01G340400.1	Wheat	cytosol	55.04	50.25
TraesCS3D01G306000.1	Wheat	cytosol	54.77	50.12
GSMUA_Achr11P...	Banana	extracellular	10.35	50.0
TraesCS1B01G342700.1	Wheat	cytosol	56.13	49.64
Zm00001d010705_P001	Maize	cytosol	55.04	49.03
Zm00001d000314_P001	Maize	cytosol	55.04	49.03
OQU78753	Sorghum	cytosol	49.32	48.79
Zm00001d043324_P001	Maize	cytosol	53.13	48.63
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	55.59	48.46
Zm00001d012644_P001	Maize	cytosol	53.68	48.05
TraesCS1D01G331400.1	Wheat	cytosol	55.86	48.01
KXG22318	Sorghum	cytosol	54.77	47.29
EES03683	Sorghum	cytosol	52.86	46.41
EES01093	Sorghum	cytosol	52.32	45.93
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.32	44.25
HORVU1Hr1G077600.2	Barley	plastid	55.59	41.89
HORVU3Hr1G075050.2	Barley	plastid	54.22	41.54
PGSC0003DMT400002031	Potato	extracellular	17.98	41.25
GSMUA_Achr10P...	Banana	cytosol	30.52	38.89
PGSC0003DMT400024512	Potato	cytosol	34.33	37.06
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	14.99	34.38
PGSC0003DMT400097155	Potato	cytosol	32.15	33.71
Zm00001d006500_P001	Maize	cytosol	25.89	23.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400054525	EnsemblPlantsGene:PGSC0003DMG400021165	EntrezGene:102584855	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2
PFAM:PF12937	PFscan:PS50181	PGSC:PGSC0003DMG400021165	RefSeq:XP_006352970.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI000295079C	UniProt:M1BWH8	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021165]

Coordinates

chr2:+:29664893..29667451

Molecular Weight (calculated)

40066.9 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.064

Length

367 amino acids

Sequence
(BLAST)

001: MIYPEPIDHF DRLPDSILLF IFNKIGDVKA LGRCSVVSRR FNSLVPEVDN VLVRVDCVIS DDESSSPSSS TGYSSDKSRH PISSLFRLVF SGLLKPFQSI
101: TQFISISPRR AASSSAAVVD GDDFEKNSVT HHSPTQVLRN FNEIKLLRIE LPSGELGIDE GVLLKWRADF GSTLDNCIIL GASSVIQPVT STSGCSLPNI
201: DGNGENDNGS IPDSFYTNGG LKLRVVWTIS SLIAASARHY LLQPIIAEHK TLDSLVLTDA DGQGVLCMNK EQLEELRVKP LSASSASKRT LVPALNMRLW
301: YAAHLELPDG TVLKGATLVA IRPSEQPKKE VVGGDGNWVA AAFKEPYGTA ARMLVKRRTY CLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.