Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 83.11 | 84.22 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 83.11 | 84.22 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 81.53 | 84.2 |
| Solyc02g070480.2.1 | Tomato | cytosol | 38.52 | 76.04 |
| AT4G18380.1 | Thale cress | cytosol | 70.18 | 70.0 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 72.56 | 69.62 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 72.3 | 68.67 |
| KRH21091 | Soybean | cytosol | 68.6 | 67.18 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 67.28 | 66.23 |
| PGSC0003DMT400054525 | Potato | cytosol | 64.12 | 66.21 |
| PGSC0003DMT400049024 | Potato | cytosol | 64.91 | 63.24 |
| Solyc08g048430.2.1 | Tomato | cytosol | 50.92 | 59.2 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 51.45 | 54.78 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 47.76 | 54.35 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 47.23 | 53.43 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 52.51 | 53.35 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 53.83 | 53.26 |
| Os01t0770400-01 | Rice | cytosol | 55.15 | 52.78 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 55.15 | 52.12 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 54.88 | 51.74 |
| Zm00001d000314_P001 | Maize | cytosol | 56.2 | 51.7 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 54.62 | 51.62 |
| GSMUA_Achr11P... | Banana | extracellular | 10.29 | 51.32 |
| Os05t0510400-02 | Rice | cytosol | 55.67 | 51.21 |
| Zm00001d010705_P001 | Maize | cytosol | 55.67 | 51.21 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 55.94 | 50.36 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 54.35 | 49.64 |
| OQU78753 | Sorghum | cytosol | 48.55 | 49.6 |
| Zm00001d043324_P001 | Maize | cytosol | 51.72 | 48.88 |
| Zm00001d012644_P001 | Maize | cytosol | 52.51 | 48.54 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 54.62 | 48.48 |
| KXG22318 | Sorghum | cytosol | 54.09 | 48.24 |
| EES03683 | Sorghum | cytosol | 52.24 | 47.37 |
| EES01093 | Sorghum | cytosol | 51.45 | 46.65 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 46.7 | 43.28 |
| HORVU1Hr1G077600.2 | Barley | plastid | 54.88 | 42.71 |
| HORVU3Hr1G075050.2 | Barley | plastid | 53.56 | 42.38 |
| GSMUA_Achr10P... | Banana | cytosol | 31.13 | 40.97 |
| AT1G22220.1 | Thale cress | cytosol | 29.55 | 35.67 |
| AT1G78100.1 | Thale cress | cytosol | 28.5 | 32.34 |
| Zm00001d006500_P001 | Maize | cytosol | 27.18 | 25.43 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:839900 | ProteinID:AAG50568.1 | ProteinID:AAG50853.1 | ProteinID:AEE31190.1 |
| ProteinID:AEE31191.1 | ArrayExpress:AT1G30200 | EnsemblPlantsGene:AT1G30200 | RefSeq:AT1G30200 | TAIR:AT1G30200 | RefSeq:AT1G30200-TAIR-G |
| EnsemblPlants:AT1G30200.2 | TAIR:AT1G30200.2 | EMBL:AY037238 | EMBL:AY058867 | Unigene:At.20393 | EMBL:BT000503 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009719 |
| GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 | InterPro:IPR001810 | RefSeq:NP_564350.1 | RefSeq:NP_973940.1 |
| PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | UniProt:Q9C534 |
| SUPFAM:SSF81383 | UniParc:UPI00000AC22A | SEG:seg | : | : | : |
Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
Coordinates
chr1:+:10625000..10627135
Molecular Weight (calculated)
41844.0 Da
IEP (calculated)
5.262
GRAVY (calculated)
-0.045
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.