CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11156	Soybean	cytosol, nucleus, vacuole	86.56	87.01
CDX78848	Canola	cytosol	20.93	83.51
Solyc02g070480.2.1	Tomato	cytosol	39.28	79.17
CDY33458	Canola	cytosol	68.22	73.33
Bra025034.1-P	Field mustard	cytosol	70.28	72.73
CDX77641	Canola	cytosol	67.7	72.38
VIT_10s0003g03880.t01	Wine grape	cytosol	74.42	72.18
AT5G46170.1	Thale cress	cytosol, plastid	73.64	72.15
PGSC0003DMT400054525	Potato	cytosol	67.7	71.39
CDX87738	Canola	cytosol	68.48	71.05
CDX99890	Canola	cytosol, golgi, nucleus	67.18	70.84
Bra022022.1-P	Field mustard	cytosol	67.7	70.62
CDY26286	Canola	cytosol, nucleus, vacuole	67.7	70.05
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	67.7	70.05
CDY43956	Canola	cytosol	67.44	69.97
AT4G18380.1	Thale cress	cytosol	68.48	69.74
Bra013303.1-P	Field mustard	cytosol	67.7	69.5
AT1G30200.2	Thale cress	cytosol	67.18	68.6
PGSC0003DMT400049024	Potato	cytosol	65.89	65.55
Solyc08g048430.2.1	Tomato	cytosol	51.94	61.66
GSMUA_Achr4P22940_001	Banana	cytosol	58.66	60.86
GSMUA_Achr7P07910_001	Banana	cytosol	60.21	60.84
GSMUA_Achr4P31500_001	Banana	cytosol	51.42	59.76
GSMUA_Achr2P17340_001	Banana	cytosol	54.78	59.55
GSMUA_Achr5P02540_001	Banana	cytosol	50.39	58.21
Os01t0770400-01	Rice	cytosol	57.62	56.31
Os05t0510400-02	Rice	cytosol	59.69	56.07
GSMUA_Achr11P...	Banana	extracellular	10.85	55.26
TraesCS3A01G296700.1	Wheat	cytosol	56.85	54.86
TraesCS3B01G340400.1	Wheat	cytosol	56.59	54.48
Zm00001d000314_P001	Maize	cytosol	57.88	54.37
TraesCS3D01G306000.1	Wheat	cytosol	56.33	54.36
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	58.91	54.16
TraesCS1B01G342700.1	Wheat	cytosol	57.62	53.73
TraesCS1D01G331400.1	Wheat	cytosol	59.17	53.63
KXG22318	Sorghum	cytosol	58.66	53.41
Zm00001d010705_P001	Maize	cytosol	56.85	53.4
Zm00001d043324_P001	Maize	cytosol	55.3	53.37
OQU78753	Sorghum	cytosol	50.65	52.83
Zm00001d012644_P001	Maize	cytosol	54.78	51.71
EES03683	Sorghum	cytosol	55.04	50.96
EES01093	Sorghum	cytosol	54.26	50.24
GSMUA_Achr7P01170_001	Banana	mitochondrion	51.68	48.9
HORVU1Hr1G077600.2	Barley	plastid	57.62	45.79
HORVU3Hr1G075050.2	Barley	plastid	56.33	45.51
GSMUA_Achr10P...	Banana	cytosol	31.52	42.36
PGSC0003DMT400002031	Potato	extracellular	14.47	35.0
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	13.7	33.12
Zm00001d006500_P001	Maize	cytosol	27.39	26.17

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100794477	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02008337	InterPro:F-box-like_dom_sf	EnsemblPlantsGene:GLYMA_13G219800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914
GO:GO:0009987	UniProt:I1M1H8	EnsemblPlants:KRH21091	ProteinID:KRH21091	ProteinID:KRH21091.1	ProteinID:KRH21092.1
PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SUPFAM:SSF81383	UniParc:UPI000233AAE4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:33279310..33282129

Molecular Weight (calculated)

42179.2 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.106

Length

387 amino acids

Sequence
(BLAST)

001: MSSQRADLAC RIFPEPDASE IDHFDRLPDS LLLLVFNKIG DVKALGRCCV VSRRFHSLVP QVENVVVRVD CVISDDDSSS SAAASDKSRG PFWNLLRLVF
101: GGIVKPIQTL GQFLGPKRPS SSSVTSPSST TSSSPLAVGT DDDSDAGVTH HSPTQVLKNF NEIRLLRIEL PSGELGIEDG VLLKWRADFG STLDNCVILG
201: ASSVFHPKDN LTDPIPTTNC NANDDNGSIP DSFYTNGGLK LRVVWTISSL IAASARHYLL QPIISEHATL DNLVLTDADG QGVLYMNREQ LEELRVKPLS
301: ASSASKRTLV PALNMRLWYA PHLELPTGVV LKGATLVAIR PSELSPNTAK KEASDLSWVS TAFEEPYRTA ATMLVKRRTY CLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.