Factsheet for GSMUA_Achr2P17340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78848	Canola	cytosol	17.98	65.98
Solyc02g070480.2.1	Tomato	cytosol	35.39	65.62
GSMUA_Achr4P31500_001	Banana	cytosol	60.39	64.56
GSMUA_Achr7P07910_001	Banana	cytosol	69.1	64.23
GSMUA_Achr5P02540_001	Banana	cytosol	58.99	62.69
GSMUA_Achr4P22940_001	Banana	cytosol	62.08	59.25
CDX77641	Canola	cytosol	57.3	56.35
CDY33458	Canola	cytosol	56.46	55.83
GSMUA_Achr11P...	Banana	extracellular	11.8	55.26
KRH21091	Soybean	cytosol	59.55	54.78
Bra013303.1-P	Field mustard	cytosol	57.87	54.64
KRH11156	Soybean	cytosol, nucleus, vacuole	58.99	54.55
Os01t0770400-01	Rice	cytosol	60.39	54.29
PGSC0003DMT400054525	Potato	cytosol	55.9	54.22
CDX87738	Canola	cytosol	56.74	54.16
Bra025034.1-P	Field mustard	cytosol	56.74	54.01
Bra022022.1-P	Field mustard	cytosol	55.9	53.64
VIT_10s0003g03880.t01	Wine grape	cytosol	60.11	53.63
CDX99890	Canola	cytosol, golgi, nucleus	55.06	53.41
CDY43956	Canola	cytosol	55.9	53.35
TraesCS3B01G340400.1	Wheat	cytosol	60.11	53.23
TraesCS3A01G296700.1	Wheat	cytosol	59.83	53.12
CDY26286	Canola	cytosol, nucleus, vacuole	55.62	52.94
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	55.62	52.94
AT5G46170.1	Thale cress	cytosol, plastid	58.71	52.91
AT4G18380.1	Thale cress	cytosol	56.46	52.89
Os05t0510400-02	Rice	cytosol	60.96	52.67
TraesCS3D01G306000.1	Wheat	cytosol	59.27	52.62
PGSC0003DMT400049024	Potato	cytosol	57.02	52.19
TraesCS1B01G342700.1	Wheat	cytosol	60.67	52.05
AT1G30200.2	Thale cress	cytosol	54.78	51.45
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	60.67	51.31
OQU78753	Sorghum	cytosol	53.37	51.21
Zm00001d043324_P001	Maize	cytosol	57.58	51.12
TraesCS1D01G331400.1	Wheat	cytosol	60.96	50.82
Zm00001d012644_P001	Maize	cytosol	58.43	50.73
GSMUA_Achr7P01170_001	Banana	mitochondrion	58.15	50.61
EES03683	Sorghum	cytosol	58.43	49.76
Zm00001d000314_P001	Maize	cytosol	57.3	49.51
Zm00001d010705_P001	Maize	cytosol	56.74	49.03
EES01093	Sorghum	cytosol	57.02	48.56
KXG22318	Sorghum	cytosol	57.58	48.24
Solyc08g048430.2.1	Tomato	cytosol	43.82	47.85
GSMUA_Achr7P21580_001	Banana	cytosol	47.19	47.59
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	46.35	47.41
HORVU1Hr1G077600.2	Barley	plastid	61.8	45.17
GSMUA_Achr10P...	Banana	cytosol	44.66	44.92
GSMUA_Achr3P18400_001	Banana	cytosol	45.79	44.9
GSMUA_Achr6P32090_001	Banana	cytosol	44.38	44.76
HORVU3Hr1G075050.2	Barley	plastid	58.99	43.84
GSMUA_Achr10P...	Banana	cytosol	33.99	42.01
CDX99469	Canola	nucleus	21.91	34.36
CDX78847	Canola	cytosol	18.26	27.31
PGSC0003DMT400002031	Potato	extracellular	10.67	23.75
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	10.39	23.12
GSMUA_Achr6P15980_001	Banana	mitochondrion	44.94	21.45

Protein Annotations

EnsemblPlants:GSMUA_Achr2P17340_001	EnsemblPlants:GSMUA_Achr2T17340_001	EnsemblPlantsGene:GSMUA_Achr2G17340_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	SEG:seg	SUPFAM:SSF81383
UniParc:UPI00029538B2	UniProt:M0S8S5	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr2G17340_001]

Coordinates

chr2:-:17933609..17936358

Molecular Weight (calculated)

38409.5 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.086

Length

356 amino acids

Sequence
(BLAST)

001: MSPPSGGAAA DPAGSRSWLR DPAVEEEEEE EVAAEGIDFF DQLPDSLVLT VFNLIGDVKD LGRCCVVTRR FHDLVPLVDS VLVRVDCVIS DGPSPSSPGG
101: DKARGILGPS SAVTSSRRYS PSSSSSEVSH HSPAEVLKNF KEIRRLRIEL PAGELGVDDG ILLKWKAEFG SSLDSCVILG AASVVPSGVI PESFYTNGNL
201: KLRVFWTISS LIAASARHYL LQPIIADHET LESLELTDVD GQGVLTMNHE QLHEFRVKPV SASGSSQRTL VPALSIRLWY APHLELPGGV VLKGATLVAV
301: RPSEEKDRDA AIVGDCGGPV GSSDRCWISN AFEEPYRSAA RMLVKRRTYS LEMNSF

Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)

001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF

Arabidopsis Description

F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.