CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99469	Canola	nucleus	50.42	52.86
CDX87738	Canola	cytosol	40.34	25.74
CDX77641	Canola	cytosol	39.08	25.69
CDY43956	Canola	cytosol	39.5	25.2
CDY33458	Canola	cytosol	37.4	24.72
CDX99890	Canola	cytosol, golgi, nucleus	36.97	23.98
CDY26286	Canola	cytosol, nucleus, vacuole	35.71	22.73
GSMUA_Achr10P...	Banana	cytosol	25.63	21.18
Os05t0510400-02	Rice	cytosol	33.61	19.42
GSMUA_Achr5P02540_001	Banana	cytosol	27.31	19.4
GSMUA_Achr7P07910_001	Banana	cytosol	31.09	19.32
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	34.03	19.24
Zm00001d010705_P001	Maize	cytosol	33.19	19.17
Zm00001d000314_P001	Maize	cytosol	32.77	18.93
GSMUA_Achr4P31500_001	Banana	cytosol	26.47	18.92
KXG22318	Sorghum	cytosol	33.19	18.59
TraesCS1D01G331400.1	Wheat	cytosol	33.19	18.5
GSMUA_Achr4P22940_001	Banana	cytosol	28.99	18.5
TraesCS3A01G296700.1	Wheat	cytosol	31.09	18.45
TraesCS3B01G340400.1	Wheat	cytosol	31.09	18.41
TraesCS1B01G342700.1	Wheat	cytosol	31.93	18.31
GSMUA_Achr2P17340_001	Banana	cytosol	27.31	18.26
TraesCS3D01G306000.1	Wheat	cytosol	30.67	18.2
Os01t0770400-01	Rice	cytosol	29.41	17.68
Zm00001d043324_P001	Maize	cytosol	29.41	17.46
Zm00001d006500_P001	Maize	cytosol	29.41	17.28
CDY46634	Canola	cytosol	20.17	17.27
HORVU1Hr1G077600.2	Barley	plastid	34.87	17.04
Zm00001d012644_P001	Maize	cytosol	28.57	16.59
CDY00435	Canola	cytosol	21.85	16.35
CDY21348	Canola	cytosol	21.85	16.05
EES03683	Sorghum	cytosol	28.15	16.03
EES01093	Sorghum	cytosol	28.15	16.03
CDY41488	Canola	cytosol	21.43	15.99
CDX91668	Canola	cytosol	21.43	15.99
HORVU3Hr1G075050.2	Barley	plastid	31.09	15.45
CDY38235	Canola	cytosol	21.01	15.43
OQU78753	Sorghum	cytosol	23.53	15.09
GSMUA_Achr7P01170_001	Banana	mitochondrion	24.79	14.43
CDY26850	Canola	cytosol	16.39	13.09
CDX87476	Canola	cytosol	17.23	12.77
CDY32130	Canola	cytosol	14.29	12.55
CDX88418	Canola	cytosol	16.81	12.46
CDY14629	Canola	cytosol	12.18	10.62
GSMUA_Achr11P...	Banana	extracellular	3.36	10.53
CDX78848	Canola	cytosol	2.52	6.19

Protein Annotations

EnsemblPlants:CDX78847	EnsemblPlantsGene:GSBRNA2T00131322001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	PFAM:PF12937
ProteinID:CDX78847	ProteinID:CDX78847.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EEFA2D	MapMan:19.2.2.8.1.4.6

Description

BnaA01g09140D

Coordinates

chrLK031816:+:420738..421519

Molecular Weight (calculated)

26770.0 Da

IEP (calculated)

11.740

GRAVY (calculated)

-0.687

Length

238 amino acids

Sequence
(BLAST)

001: MAVIHRSDPL SRIHPEPLDP PDFFDHLPDS ILLLVFNRIG DVKALGRCGV VSKRFHSLVP QVENVVVRVD CVISDDDDPS SLSPDKPRSS ASPFSAIFRL
101: IFKPLHALTQ LLSTKRSSSS SSRRDSPLPD AGPQKLQRDS SPPHRASRRR ARHRRRRFAE MACGVRVNPR ELRHPRRLLR GHGPSSFRRR QRGGGGGGQR
201: EHTGVVLHER RAEASCRVDD QLPDRCLREA LLASADHR

Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)

001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF

Arabidopsis Description

F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.