Factsheet for GSMUA_Achr4P22940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular	16.35	80.26
GSMUA_Achr4P31500_001	Banana	cytosol	63.81	71.47
GSMUA_Achr5P02540_001	Banana	cytosol	61.93	68.96
GSMUA_Achr7P07910_001	Banana	cytosol	67.83	66.06
Solyc02g070480.2.1	Tomato	cytosol	33.51	65.1
GSMUA_Achr2P17340_001	Banana	cytosol	59.25	62.08
CDX78848	Canola	cytosol	16.09	61.86
GSMUA_Achr7P01170_001	Banana	mitochondrion	66.22	60.39
KRH11156	Soybean	cytosol, nucleus, vacuole	60.86	58.96
KRH21091	Soybean	cytosol	60.86	58.66
CDY33458	Canola	cytosol	56.3	58.33
PGSC0003DMT400054525	Potato	cytosol	57.37	58.31
CDX77641	Canola	cytosol	56.57	58.29
VIT_10s0003g03880.t01	Wine grape	cytosol	61.66	57.64
Bra025034.1-P	Field mustard	cytosol	57.37	57.22
Bra022022.1-P	Field mustard	cytosol	56.03	56.33
CDX87738	Canola	cytosol	56.3	56.3
CDX99890	Canola	cytosol, golgi, nucleus	55.23	56.13
CDY43956	Canola	cytosol	56.03	56.03
Os01t0770400-01	Rice	cytosol	59.25	55.81
Bra013303.1-P	Field mustard	cytosol	56.3	55.7
AT5G46170.1	Thale cress	cytosol, plastid	58.45	55.19
CDY26286	Canola	cytosol, nucleus, vacuole	54.96	54.81
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	54.96	54.81
TraesCS3A01G296700.1	Wheat	cytosol	58.18	54.11
PGSC0003DMT400049024	Potato	cytosol	56.3	53.98
AT4G18380.1	Thale cress	cytosol	54.96	53.95
Zm00001d043324_P001	Maize	cytosol	57.91	53.87
Zm00001d012644_P001	Maize	cytosol	58.71	53.41
Os05t0510400-02	Rice	cytosol	58.98	53.4
TraesCS3D01G306000.1	Wheat	cytosol	57.37	53.37
TraesCS3B01G340400.1	Wheat	cytosol	57.37	53.23
OQU78753	Sorghum	cytosol	52.55	52.83
AT1G30200.2	Thale cress	cytosol	53.35	52.51
EES03683	Sorghum	cytosol	58.71	52.39
TraesCS1D01G331400.1	Wheat	cytosol	59.52	51.99
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	58.45	51.78
Zm00001d000314_P001	Maize	cytosol	57.1	51.7
TraesCS1B01G342700.1	Wheat	cytosol	57.37	51.57
Solyc08g048430.2.1	Tomato	cytosol	45.04	51.53
EES01093	Sorghum	cytosol	57.37	51.2
Zm00001d010705_P001	Maize	cytosol	55.76	50.49
KXG22318	Sorghum	cytosol	57.1	50.12
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	45.31	48.56
GSMUA_Achr7P21580_001	Banana	cytosol	45.58	48.16
GSMUA_Achr6P32090_001	Banana	cytosol	44.5	47.03
GSMUA_Achr10P...	Banana	cytosol	44.5	46.89
GSMUA_Achr3P18400_001	Banana	cytosol	45.58	46.83
GSMUA_Achr10P...	Banana	cytosol	34.58	44.79
HORVU3Hr1G075050.2	Barley	plastid	57.37	44.68
HORVU1Hr1G077600.2	Barley	plastid	58.18	44.56
CDX99469	Canola	nucleus	22.79	37.44
CDX78847	Canola	cytosol	18.5	28.99
PGSC0003DMT400002031	Potato	extracellular	11.8	27.5
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	11.53	26.88
GSMUA_Achr6P15980_001	Banana	mitochondrion	44.77	22.39

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22940_001	EnsemblPlants:GSMUA_Achr4T22940_001	EnsemblPlantsGene:GSMUA_Achr4G22940_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0002957A89	UniProt:M0SRA5	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein At5g46170 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22940_001]

Coordinates

chr4:+:23191436..23193935

Molecular Weight (calculated)

40444.2 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.027

Length

373 amino acids

Sequence
(BLAST)

001: MDGLRPDHWD PVEEDEGIDH FDRLPDSVLL VIFNLVGDVK ALGRCCVVSR RFHALVRLVD EVVVRVDCVI SDDPSLSRVA EAGGAAASDK PRGVFSHLAR
101: IVLGGLVKPL SAPSSSSFSS TSSDVSHHSP TEVLKNFNVI RRLRIELPDG ELGVDDGVLL KWRADFGSTL DSCVILSASS VAFSSSISPD SPNPNPSLSF
201: EDACVGDDCG SMPDSFYTDG SLKRRVVWTI SSLIAASARH YLLHPIVADH ETLESLHLTD ADGQGVLTMD RLQLQELRGK PVMASGCSQR TLLPALSMRL
301: WYAQQLELPD GMLLKGATLL AIKPSEEWTT GAVGGSVGLS DGCRVSDAFE EPYRTAAKML MNRRTYCLEM NSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.