Factsheet for Solyc02g070480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054525	Potato	cytosol	96.88	50.68
GSMUA_Achr11P...	Banana	extracellular	19.79	50.0
VIT_10s0003g03880.t01	Wine grape	cytosol	84.9	40.85
CDX99890	Canola	cytosol, golgi, nucleus	76.56	40.05
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	76.56	39.3
CDY26286	Canola	cytosol, nucleus, vacuole	76.56	39.3
KRH21091	Soybean	cytosol	79.17	39.28
KRH11156	Soybean	cytosol, nucleus, vacuole	78.65	39.22
AT1G30200.2	Thale cress	cytosol	76.04	38.52
GSMUA_Achr4P31500_001	Banana	cytosol	65.1	37.54
GSMUA_Achr2P17340_001	Banana	cytosol	65.62	35.39
GSMUA_Achr5P02540_001	Banana	cytosol	61.46	35.22
GSMUA_Achr4P22940_001	Banana	cytosol	65.1	33.51
GSMUA_Achr7P07910_001	Banana	cytosol	64.06	32.11
OQU78753	Sorghum	cytosol	60.94	31.54
Os01t0770400-01	Rice	cytosol	64.58	31.31
Os05t0510400-02	Rice	cytosol	67.19	31.31
TraesCS3D01G306000.1	Wheat	cytosol	65.1	31.17
TraesCS3A01G296700.1	Wheat	cytosol	65.1	31.17
TraesCS3B01G340400.1	Wheat	cytosol	65.1	31.09
Zm00001d010705_P001	Maize	cytosol	64.06	29.85
Solyc08g048430.2.1	Tomato	cytosol	50.52	29.75
TraesCS1B01G342700.1	Wheat	cytosol	64.06	29.64
Zm00001d000314_P001	Maize	cytosol	63.54	29.61
Zm00001d012644_P001	Maize	cytosol	63.02	29.51
Zm00001d043324_P001	Maize	cytosol	60.94	29.18
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	63.54	28.98
KXG22318	Sorghum	cytosol	63.54	28.71
GSMUA_Achr7P01170_001	Banana	mitochondrion	60.94	28.61
TraesCS1D01G331400.1	Wheat	cytosol	63.54	28.57
EES03683	Sorghum	cytosol	61.98	28.47
EES01093	Sorghum	cytosol	60.94	27.99
HORVU3Hr1G075050.2	Barley	plastid	65.1	26.1
HORVU1Hr1G077600.2	Barley	plastid	63.02	24.85
Solyc04g072930.1.1	Tomato	cytosol	42.19	23.82
Zm00001d006500_P001	Maize	cytosol	31.25	14.81
GSMUA_Achr10P...	Banana	cytosol	21.35	14.24

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810
UniProt:K4B829	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SUPFAM:SSF81383
EnsemblPlantsGene:Solyc02g070480.2	EnsemblPlants:Solyc02g070480.2.1	UniParc:UPI000276884F	:	:	:

Description

No Description!

Coordinates

chr2:+:40221482..40223040

Molecular Weight (calculated)

21453.2 Da

IEP (calculated)

8.820

GRAVY (calculated)

0.005

Length

192 amino acids

Sequence
(BLAST)

001: MIYPEPMDHF DRLPDSILLF IFNKIGDVKA LGRCSVVSRR FNSLVPELRV VWTISSLIAA SARHYLLQPI IAEHKTLDSL VLTDADEQGV LCMNKDQLEE
101: LRVKPLSASS ASKRTLVPAL NMRLWYAAHL ELPDGTVLKG ATLVAIRPSE QPKKEVVGAD GNWVGAAFKE PYGTAARMLV KRRTYCLEMN SF

Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)

001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF

Arabidopsis Description

F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.