Factsheet for VIT_10s0003g03880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78848	Canola	cytosol	21.8	89.69
Solyc02g070480.2.1	Tomato	cytosol	40.85	84.9
CDY33458	Canola	cytosol	70.68	78.33
CDX77641	Canola	cytosol	69.92	77.07
AT5G46170.1	Thale cress	cytosol, plastid	75.94	76.71
Bra025034.1-P	Field mustard	cytosol	71.68	76.47
CDX87738	Canola	cytosol	70.68	75.6
KRH11156	Soybean	cytosol, nucleus, vacuole	71.93	74.55
Bra013303.1-P	Field mustard	cytosol	70.43	74.54
KRH21091	Soybean	cytosol	72.18	74.42
Bra022022.1-P	Field mustard	cytosol	69.17	74.39
AT4G18380.1	Thale cress	cytosol	70.43	73.95
CDY43956	Canola	cytosol	68.92	73.73
CDX99890	Canola	cytosol, golgi, nucleus	67.17	73.02
CDY26286	Canola	cytosol, nucleus, vacuole	68.42	72.99
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	68.42	72.99
AT1G30200.2	Thale cress	cytosol	68.67	72.3
PGSC0003DMT400054525	Potato	cytosol	65.91	71.66
PGSC0003DMT400049024	Potato	cytosol	66.17	67.87
Solyc08g048430.2.1	Tomato	cytosol	51.88	63.5
GSMUA_Achr4P22940_001	Banana	cytosol	57.64	61.66
GSMUA_Achr7P07910_001	Banana	cytosol	58.4	60.84
GSMUA_Achr2P17340_001	Banana	cytosol	53.63	60.11
GSMUA_Achr5P02540_001	Banana	cytosol	49.87	59.4
GSMUA_Achr4P31500_001	Banana	cytosol	49.37	59.16
Os01t0770400-01	Rice	cytosol	56.89	57.32
TraesCS3A01G296700.1	Wheat	cytosol	57.39	57.11
Os05t0510400-02	Rice	cytosol	58.9	57.04
TraesCS3B01G340400.1	Wheat	cytosol	57.14	56.72
GSMUA_Achr11P...	Banana	extracellular	10.78	56.58
TraesCS3D01G306000.1	Wheat	cytosol	56.39	56.11
TraesCS1B01G342700.1	Wheat	cytosol	57.89	55.66
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	57.89	54.87
TraesCS1D01G331400.1	Wheat	cytosol	57.89	54.1
Zm00001d000314_P001	Maize	cytosol	55.39	53.64
OQU78753	Sorghum	cytosol	49.62	53.37
Zm00001d010705_P001	Maize	cytosol	54.64	52.91
Zm00001d012644_P001	Maize	cytosol	54.14	52.68
Zm00001d043324_P001	Maize	cytosol	52.88	52.62
EES03683	Sorghum	cytosol	54.64	52.15
KXG22318	Sorghum	cytosol	55.39	52.0
EES01093	Sorghum	cytosol	53.63	51.2
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.12	47.92
HORVU3Hr1G075050.2	Barley	plastid	57.14	47.6
HORVU1Hr1G077600.2	Barley	plastid	57.39	47.02
VIT_18s0001g05310.t01	Wine grape	cytosol	34.34	45.67
GSMUA_Achr10P...	Banana	cytosol	30.83	42.71
VIT_06s0009g03680.t01	Wine grape	cytosol	20.8	39.9
VIT_06s0009g03690.t01	Wine grape	cytosol	33.33	38.89
PGSC0003DMT400002031	Potato	extracellular	14.54	36.25
VIT_06s0009g03670.t01	Wine grape	cytosol	30.58	35.78
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	12.28	30.62
Zm00001d006500_P001	Maize	cytosol	26.82	26.42

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100251447	wikigene:100251447	MapMan:19.2.2.8.1.4.6	EMBL:AM435047	ProteinID:CAN73778
ProteinID:CAN73778.1	ProteinID:CCB55809	ProteinID:CCB55809.1	InterPro:F-box-like_dom_sf	UniProt:F6HLT5	EMBL:FN595992
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005975
GO:GO:0005992	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987
EntrezGene:LOC100251447	wikigene:LOC100251447	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SUPFAM:SSF81383	TIGR:TC62204
TIGR:TC65782	UniParc:UPI00015CAD3D	ArrayExpress:VIT_10s0003g03880	EnsemblPlantsGene:VIT_10s0003g03880	EnsemblPlants:VIT_10s0003g03880.t01	RefSeq:XP_002278480
RefSeq:XP_002278480.1	RefSeq:XP_003633032	RefSeq:XP_003633032.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:6644896..6647171

Molecular Weight (calculated)

43056.6 Da

IEP (calculated)

6.244

GRAVY (calculated)

-0.080

Length

399 amino acids

Sequence
(BLAST)

001: MASSMRPDPS TRIWPEPQNS PPPVMMMAEA IDHFDRLPDS LLLLVFNKIG DVKALGRCCV VSRRFHTLVP QVENVVVRVD CVISDDESSS AAGSLEKSRG
101: PFSHLFRLVF GGIVKPLQAL GQFLGPKRSA PTTSSSLAVG GGSEEDGDVD HQTGGVTHHS PTQVLKNFNE IRFLRIELPS GELGIEDGVL LKWRADFGST
201: LDNCVILGAA SVICPGPTKG SGVQDSGNDA FCVSNGGDDN GSIPESFYTN GGLKLRVVWT ISSLIAASAR HYLLQPIIAE HKTLDSLVLT DADGQGVLCM
301: NRDQLEELRV KPLSASSASK RTLVPALNMR LWYAPHLELP DGIVLKGATL VAIRPSEQSV TKKEVSDGSW VSAAFEEPYG TAAKMLVKRR TYCLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.