Factsheet for TraesCS1B01G342700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	91.33	90.02
TraesCS1D01G331400.1	Wheat	cytosol	86.51	84.07
Os05t0510400-02	Rice	cytosol	73.25	73.79
HORVU1Hr1G077600.2	Barley	plastid	83.37	71.05
Zm00001d000314_P001	Maize	cytosol	66.99	67.48
Zm00001d010705_P001	Maize	cytosol	66.75	67.23
KXG22318	Sorghum	cytosol	67.47	65.88
Solyc02g070480.2.1	Tomato	cytosol	29.64	64.06
TraesCS3B01G340400.1	Wheat	cytosol	61.45	63.43
GSMUA_Achr2P17340_001	Banana	cytosol	52.05	60.67
CDX78848	Canola	cytosol	13.98	59.79
CDY33458	Canola	cytosol	51.33	59.17
GSMUA_Achr5P02540_001	Banana	cytosol	47.71	59.1
GSMUA_Achr7P07910_001	Banana	cytosol	54.22	58.75
KRH11156	Soybean	cytosol, nucleus, vacuole	54.46	58.7
CDX77641	Canola	cytosol	50.84	58.29
GSMUA_Achr4P31500_001	Banana	cytosol	46.75	58.26
CDX87738	Canola	cytosol	52.29	58.18
Bra025034.1-P	Field mustard	cytosol	52.29	58.02
VIT_10s0003g03880.t01	Wine grape	cytosol	55.66	57.89
KRH21091	Soybean	cytosol	53.73	57.62
GSMUA_Achr4P22940_001	Banana	cytosol	51.57	57.37
Bra022022.1-P	Field mustard	cytosol	51.08	57.14
AT5G46170.1	Thale cress	cytosol, plastid	54.22	56.96
CDY43956	Canola	cytosol	50.84	56.57
Bra013303.1-P	Field mustard	cytosol	51.33	56.5
PGSC0003DMT400054525	Potato	cytosol	49.64	56.13
AT4G18380.1	Thale cress	cytosol	51.08	55.79
CDY26286	Canola	cytosol, nucleus, vacuole	50.12	55.62
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	50.12	55.62
CDX99890	Canola	cytosol, golgi, nucleus	49.16	55.59
AT1G30200.2	Thale cress	cytosol	49.64	54.35
PGSC0003DMT400049024	Potato	cytosol	49.64	52.96
GSMUA_Achr11P...	Banana	extracellular	9.4	51.32
Solyc08g048430.2.1	Tomato	cytosol	39.52	50.31
TraesCS3B01G368000.1	Wheat	cytosol	40.72	47.74
TraesCS1B01G318500.1	Wheat	cytosol	40.48	47.19
GSMUA_Achr7P01170_001	Banana	mitochondrion	46.02	46.7
TraesCS4B01G177100.1	Wheat	cytosol	38.8	43.4
CDX99469	Canola	nucleus	19.52	35.68
CDX78847	Canola	cytosol	18.31	31.93
PGSC0003DMT400002031	Potato	extracellular	11.33	29.38
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	9.64	25.0

Protein Annotations

EnsemblPlants:TraesCS1B01G342700.1	EnsemblPlantsGene:TraesCS1B01G342700	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr1B:+:571164481..571174139

Molecular Weight (calculated)

43604.9 Da

IEP (calculated)

6.109

GRAVY (calculated)

0.032

Length

415 amino acids

Sequence
(BLAST)

001: MAADAAAAGP RRWRCEEEEQ QPHRLSAAAA ADDRFDGLPD PLLLLIFNRI GDVKALGRCA LVSRRFRALV PLVDSVLVRV DCVIPDDPAS SGSPSSSAPS
101: FPTATASARA RGVFSQIARM LIGGIVKPIQ ALGQILSHAG SASASLSSFR RSASSSLSSS SASAPPGDVS HHSPSEVLRS FKELRVSLRI ELPAGELGMD
201: DGVLLKWKAD FGSTLGSCVI LGAASASATK DGTTAAPPPA AADCAESDDS GSIPESFYTN GGLKLRVLWT ISSLIAASAR HYLLQPIIAD HALLESLDLT
301: DADGQGVLTM DKWQLQELRV RPVSASGDSH RTLMPALSMR LWYAPHIELP GGTVLNGATL VAIKPSEEAM MDAVGNATAG SAGGSWVSDA FEEPYRTAVG
401: VLLKRRMYSL EMNSF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.