Factsheet for GSMUA_Achr7P07910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17340_001	Banana	cytosol	64.23	69.1
GSMUA_Achr4P22940_001	Banana	cytosol	66.06	67.83
GSMUA_Achr5P02540_001	Banana	cytosol	57.7	65.97
CDX78848	Canola	cytosol	16.45	64.95
GSMUA_Achr4P31500_001	Banana	cytosol	56.4	64.86
Solyc02g070480.2.1	Tomato	cytosol	32.11	64.06
CDY33458	Canola	cytosol	57.7	61.39
CDX77641	Canola	cytosol	56.92	60.22
KRH21091	Soybean	cytosol	60.84	60.21
KRH11156	Soybean	cytosol, nucleus, vacuole	60.31	60.0
Bra025034.1-P	Field mustard	cytosol	58.49	59.89
GSMUA_Achr11P...	Banana	extracellular	11.75	59.21
Os01t0770400-01	Rice	cytosol	60.84	58.84
VIT_10s0003g03880.t01	Wine grape	cytosol	60.84	58.4
CDX87738	Canola	cytosol	56.66	58.18
AT5G46170.1	Thale cress	cytosol, plastid	59.53	57.72
Bra022022.1-P	Field mustard	cytosol	55.87	57.68
PGSC0003DMT400054525	Potato	cytosol	55.09	57.49
CDY43956	Canola	cytosol	55.87	57.37
AT4G18380.1	Thale cress	cytosol	56.66	57.11
GSMUA_Achr10P...	Banana	cytosol	42.82	56.94
Bra013303.1-P	Field mustard	cytosol	55.61	56.5
TraesCS3B01G340400.1	Wheat	cytosol	59.27	56.47
TraesCS3A01G296700.1	Wheat	cytosol	59.01	56.36
TraesCS3D01G306000.1	Wheat	cytosol	58.75	56.11
Os05t0510400-02	Rice	cytosol	60.31	56.07
CDX99890	Canola	cytosol, golgi, nucleus	53.26	55.59
Zm00001d043324_P001	Maize	cytosol	57.96	55.36
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	53.52	54.81
CDY26286	Canola	cytosol, nucleus, vacuole	53.52	54.81
Zm00001d000314_P001	Maize	cytosol	58.75	54.61
OQU78753	Sorghum	cytosol	52.74	54.45
Zm00001d010705_P001	Maize	cytosol	58.49	54.37
TraesCS1B01G342700.1	Wheat	cytosol	58.75	54.22
Zm00001d012644_P001	Maize	cytosol	57.96	54.15
TraesCS1D01G331400.1	Wheat	cytosol	60.31	54.1
AT1G30200.2	Thale cress	cytosol	53.26	53.83
GSMUA_Achr7P01170_001	Banana	mitochondrion	57.44	53.79
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	59.01	53.68
EES03683	Sorghum	cytosol	58.49	53.59
PGSC0003DMT400049024	Potato	cytosol	54.31	53.47
EES01093	Sorghum	cytosol	57.96	53.11
KXG22318	Sorghum	cytosol	57.96	52.24
Solyc08g048430.2.1	Tomato	cytosol	43.86	51.53
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	45.17	49.71
GSMUA_Achr7P21580_001	Banana	cytosol	45.69	49.58
GSMUA_Achr6P32090_001	Banana	cytosol	44.39	48.16
HORVU1Hr1G077600.2	Barley	plastid	60.84	47.84
GSMUA_Achr10P...	Banana	cytosol	43.86	47.46
HORVU3Hr1G075050.2	Barley	plastid	59.27	47.39
GSMUA_Achr3P18400_001	Banana	cytosol	44.91	47.38
CDX99469	Canola	nucleus	23.24	39.21
CDX78847	Canola	cytosol	19.32	31.09
PGSC0003DMT400002031	Potato	extracellular	11.23	26.88
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	9.66	23.12
GSMUA_Achr6P15980_001	Banana	mitochondrion	43.86	22.52

Protein Annotations

EnsemblPlants:GSMUA_Achr7P07910_001	EnsemblPlants:GSMUA_Achr7T07910_001	EnsemblPlantsGene:GSMUA_Achr7G07910_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2
PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000296D01E	UniProt:M0TFN1
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

F-box protein At5g46170 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07910_001]

Coordinates

chr7:+:5880638..5881858

Molecular Weight (calculated)

41494.7 Da

IEP (calculated)

5.268

GRAVY (calculated)

-0.017

Length

383 amino acids

Sequence
(BLAST)

001: MTSPGRPAAA VDLRQWRGDA QEEEDEEGID HLDRLPDSVL LVVFNRIGDV KALGRCCVVC RRFHDLVPLV DSVLVRVDCV ISDDPSPSPA GGAGADRSRG
101: VFSHLARIVI GGIVKPLQAL GHILAPSAAI SHHSPAEVLK NFKEIRRLRI ELPAGELGVD DGVLLKWKAE FGSTLDSCVI LGASSVLSSP SILAKSSSLN
201: PNPSFQDTCG ADDSGSMPDS FYTSGNLKLR VFWTISSLIA ASARHYLLQP IIADHEPLER LELTDVDGQG VLTMDRWQLQ EFRAKPLSAS GSSQRTLVPA
301: LSMWLWYAPY LELPGGMVLK GATLVAVRPS QEQGMEVASS GEFGGVVEFS DRCSISSAFE EPYRSAAGML MKRRTYCLEM NSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.