Factsheet for GSMUA_Achr6P15980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P03360_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P24210_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr2P04250_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr4P25050_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr5P20550_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr8P12830_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_AchrUn_...	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	37.4	80.17
GSMUA_Achr3P18400_001	Banana	cytosol	37.94	77.96
GSMUA_Achr7P21580_001	Banana	cytosol	32.71	69.12
GSMUA_Achr10P...	Banana	cytosol	31.64	66.67
GSMUA_Achr6P32090_001	Banana	cytosol	31.23	66.01
GSMUA_Achr2P17340_001	Banana	cytosol	21.45	44.94
GSMUA_Achr4P22940_001	Banana	cytosol	22.39	44.77
GSMUA_Achr4P31500_001	Banana	cytosol	19.84	44.44
VIT_18s0001g05310.t01	Wine grape	cytosol	17.83	44.33
GSMUA_Achr5P02540_001	Banana	cytosol	19.71	43.88
GSMUA_Achr7P07910_001	Banana	cytosol	22.52	43.86
GSMUA_Achr11P...	Banana	extracellular	4.29	42.11
GSMUA_Achr7P01170_001	Banana	mitochondrion	20.64	37.65
VIT_06s0009g03690.t01	Wine grape	cytosol	16.76	36.55
Bra016384.1-P	Field mustard	cytosol	9.79	36.5
CDY46634	Canola	cytosol	13.54	36.33
VIT_06s0009g03680.t01	Wine grape	cytosol	10.05	36.06
VIT_06s0009g03670.t01	Wine grape	cytosol	16.22	35.48
CDY00435	Canola	cytosol	15.01	35.22
PGSC0003DMT400024512	Potato	cytosol	15.95	35.0
Solyc04g072930.1.1	Tomato	cytosol	15.95	35.0
Bra012314.1-P	Field mustard	cytosol	14.88	34.91
CDX88418	Canola	cytosol	15.01	34.89
AT1G22220.1	Thale cress	cytosol	14.61	34.71
CDX87476	Canola	cytosol	14.88	34.58
Bra015630.1-P	Field mustard	cytosol	14.88	34.58
AT1G78100.1	Thale cress	cytosol	15.42	34.43
CDY38235	Canola	cytosol	14.75	33.95
CDY21348	Canola	cytosol	14.75	33.95
CDY26850	Canola	cytosol	13.4	33.56
CDY41488	Canola	cytosol	14.21	33.23
Bra031373.1-P	Field mustard	cytosol	14.34	33.02
CDX91668	Canola	cytosol	13.94	32.6
Bra008345.1-P	Field mustard	cytosol	13.4	31.55
CDY14629	Canola	cytosol	11.53	31.5
GSMUA_Achr10P...	Banana	cytosol	11.93	30.9
PGSC0003DMT400097155	Potato	cytosol	14.34	30.57
CDY32130	Canola	cytosol	8.98	24.72

Protein Annotations

MapMan:16.6.1.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.140.10	InterPro:APOBEC/CMP_deaminase_Zn-bd	InterPro:CMP_dCMP_dom	InterPro:Cytidine_deaminase-like
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008270
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G15980_001	EnsemblPlants:GSMUA_Achr6P15980_001	EnsemblPlants:GSMUA_Achr6T15980_001	InterPro:IPR002125	UniProt:M0T7E6
PFAM:PF00383	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	SUPFAM:SSF53927
SUPFAM:SSF81383	UniParc:UPI00029496A4	SEG:seg	:	:	:

Description

F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr6G15980_001]

Coordinates

chr6:-:10660669..10671825

Molecular Weight (calculated)

81918.7 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.206

Length

746 amino acids

Sequence
(BLAST)

001: MGQQRLKISY QVRCAVTLGR RAVNLSSSCS VSSGITKTCG PVNPERSINV EHFLLPRALL RSSKSRNRSL DSPLSRSSAK LRGFGSLGKW FCGQRLDFPG
101: SWEPPRLQPS AILRSLDRCI PSFVPVEKRS QLAFIVNVTM TFELNRRKSI GGSLFASVQR ECLIAQQGNM QSKSRIHADP SLYQDHFDQI PDSLVLLIFN
201: KVADIRSLGR CLAVSKRFNI LAPQVHDVYV RIGRVVPVDG DAEEALTLSS PKPRNLLAHL LKLMLFAILK PFQHLQNFSA GHKPLLPHLS HHSPAQVLKK
301: FTHVRNLRIE LPAGDVGTED GVFLKWRAEF GSTLQNCVIL GGTKMDRRPS SANLEGSVED TGSIPEPFYT NGGLKLRVVW TISSLIAAST WHYLVRQIIR
401: DHPTLRSVVL TDADGQGTLT MGADQLKEFR EKPLAASASS NRTQVPASNM KLRYTPYLEL PEGMALQGAT LVAIKPAEEG TSSGNCSRKD AEAFVCGAFD
501: GPFQAAAKAL LKRRTYLLEM NDHKPTHRAR DERRAIPSVS AAADAGRVAS VGQLSMALET GHDLLTELRF MELALEQARF ALENLEVPVG CVIVEDGKVI
601: ASGSNRTSAT RNATRHAEME AIDTLLEEWQ KIGLGQSEVA EKFSRCDLYV TCEPCIMCAT ALSILGIGKV FYGCSNDKFG GCGSVLSLHE SASEKLSRGD
701: LQAKSFKCTG GLMSEEAVAL FRNFYEQGNP NAPKPHRPVR MPQSTE

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.