Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 34.29 | 35.19 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 33.14 | 33.92 |
| Zm00001d006501_P001 | Maize | cytosol | 20.29 | 32.57 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 32.86 | 32.3 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 32.57 | 32.29 |
| PGSC0003DMT400054525 | Potato | cytosol | 33.71 | 32.15 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 32.29 | 32.01 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 31.71 | 31.9 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 28.86 | 31.86 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 32.29 | 31.74 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 32.29 | 31.74 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 18.86 | 31.73 |
| Os01t0812200-01 | Rice | cytosol | 31.14 | 30.88 |
| PGSC0003DMT400049024 | Potato | cytosol | 34.29 | 30.85 |
| EES19721 | Sorghum | cytosol | 31.14 | 30.79 |
| Zm00001d038537_P001 | Maize | cytosol | 30.57 | 30.23 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 30.57 | 30.23 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 30.57 | 30.06 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 30.29 | 29.94 |
| PGSC0003DMT400024512 | Potato | cytosol | 28.86 | 29.71 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 31.14 | 29.7 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 31.14 | 29.62 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 31.14 | 29.38 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 31.14 | 29.38 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 30.0 | 29.25 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 29.43 | 29.18 |
| Os03t0321300-01 | Rice | cytosol | 32.0 | 29.17 |
| EES01639 | Sorghum | cytosol | 29.43 | 29.1 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 30.0 | 28.93 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 31.14 | 28.68 |
| Zm00001d043125_P001 | Maize | cytosol | 28.57 | 28.57 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 28.57 | 28.33 |
| GSMUA_Achr10P... | Banana | cytosol | 28.57 | 28.25 |
| Zm00001d028957_P001 | Maize | cytosol | 26.57 | 26.72 |
| Zm00001d043016_P001 | Maize | plastid | 18.0 | 24.71 |
| Os05t0490300-01 | Rice | mitochondrion | 31.71 | 24.67 |
| Zm00001d047573_P001 | Maize | plastid | 30.57 | 24.6 |
| PGSC0003DMT400002031 | Potato | extracellular | 8.86 | 19.38 |
| PGSC0003DMT400054900 | Potato | extracellular, plasma membrane | 7.43 | 16.25 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 30.57 | 14.34 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400097155 | EnsemblPlantsGene:PGSC0003DMG400046726 | EntrezGene:107057962 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF12 | PGSC:PGSC0003DMG400046726 | RefSeq:XP_015158622.1 | SEG:seg |
| SUPFAM:SSF81383 | UniParc:UPI0002949BA0 | UniProt:M1E012 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046726]
Coordinates
chr1:+:5347223..5348275
Molecular Weight (calculated)
39620.6 Da
IEP (calculated)
5.370
GRAVY (calculated)
-0.310
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIHEENEED LFDRLPDAIL LTIFDKLQDA KSLSISSSLC KRFRFLTTQT QHISLAIPSQ KYHKPLPFSS RNKFIRFFLN PFQFVYRQIS QWNQICMPCD
101: NTQKKSDSYS CCTCSSYASS SPAEILRNFT EIKELEIRVP SNGGGGDSDS LLKWKGEFGS QLKNCLVVGG ISLSPIRNDR IDNSDAPIRE LELQRMTNED
201: LKLRIVWIIS SLIAASARHC LLEEVIKEKK LLNKVVIMDD IGQGKVCMNG EEVEEMRRDA EVFSSKMPAL KVKMWYSPEL ELPEGGCVMK GATLVVIKPV
301: EEWSKADDGG DLVAKGFGFA GDGKEEKVFD EVARELVKLE RSYSLEMNSF
101: NTQKKSDSYS CCTCSSYASS SPAEILRNFT EIKELEIRVP SNGGGGDSDS LLKWKGEFGS QLKNCLVVGG ISLSPIRNDR IDNSDAPIRE LELQRMTNED
201: LKLRIVWIIS SLIAASARHC LLEEVIKEKK LLNKVVIMDD IGQGKVCMNG EEVEEMRRDA EVFSSKMPAL KVKMWYSPEL ELPEGGCVMK GATLVVIKPV
301: EEWSKADDGG DLVAKGFGFA GDGKEEKVFD EVARELVKLE RSYSLEMNSF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.