Factsheet for TraesCS3D01G518800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G011500.1
TraesCS2A01G533200.1
TraesCS2B01G010100.2
TraesCS2B01G562800.1
TraesCS2D01G012100.1
TraesCS2D01G535100.1
TraesCS4A01G313200.1
TraesCS5B01G566700.1
TraesCS7D01G038500.1
TraesCSU01G065000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	TraesCS2A01G011500.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2A01G533200.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2B01G010100.2	AT4G28720.1	21798944
AT1G78100.1	TraesCS2B01G562800.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2D01G012100.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2D01G535100.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS4A01G313200.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS5B01G566700.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS7D01G038500.1	AT4G28720.1	21798944
AT1G78100.1	TraesCSU01G065000.1	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G307200.1	Wheat	cytosol	88.01	78.37
EES19721	Sorghum	cytosol	84.23	75.42
Zm00001d038537_P001	Maize	cytosol	83.6	74.86
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	81.39	72.88
TraesCS3D01G329900.1	Wheat	cytosol	79.5	70.79
GSMUA_Achr7P21580_001	Banana	cytosol	70.03	62.89
GSMUA_Achr10P...	Banana	cytosol	67.19	60.17
Os05t0490300-01	Rice	mitochondrion	84.86	59.78
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	55.52	47.83
VIT_18s0001g05310.t01	Wine grape	cytosol	37.54	39.67
TraesCS3D01G306000.1	Wheat	cytosol	46.06	36.41
TraesCS1D01G331400.1	Wheat	cytosol	45.43	33.72
Bra016384.1-P	Field mustard	cytosol	20.5	32.5
CDX91668	Canola	cytosol	32.49	32.29
AT1G22220.1	Thale cress	cytosol	31.86	32.17
CDY46634	Canola	cytosol	28.08	32.01
CDY41488	Canola	cytosol	32.18	31.97
CDY21348	Canola	cytosol	32.49	31.79
VIT_06s0009g03690.t01	Wine grape	cytosol	34.07	31.58
Bra031373.1-P	Field mustard	cytosol	32.18	31.48
Bra012314.1-P	Field mustard	cytosol	31.55	31.45
CDY38235	Canola	cytosol	31.86	31.17
CDX88418	Canola	cytosol	31.55	31.15
CDY00435	Canola	cytosol	31.23	31.13
PGSC0003DMT400024512	Potato	cytosol	32.81	30.59
Solyc04g072930.1.1	Tomato	cytosol	32.81	30.59
CDY26850	Canola	cytosol	28.71	30.54
CDX87476	Canola	cytosol	30.6	30.22
Bra015630.1-P	Field mustard	cytosol	30.6	30.22
AT1G78100.1	Thale cress	cytosol	31.23	29.64
VIT_06s0009g03670.t01	Wine grape	cytosol	31.55	29.33
PGSC0003DMT400097155	Potato	cytosol	31.86	28.86
Bra008345.1-P	Field mustard	cytosol	28.71	28.71
CDY14629	Canola	cytosol	24.29	28.21
VIT_06s0009g03680.t01	Wine grape	cytosol	17.03	25.96
CDY32130	Canola	cytosol	19.24	22.51

Protein Annotations

EnsemblPlants:TraesCS3D01G518800.1	EnsemblPlantsGene:TraesCS3D01G518800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr3D:-:601617086..601618622

Molecular Weight (calculated)

34781.1 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.073

Length

317 amino acids

Sequence
(BLAST)

001: MLPKARIHAD PAPDFEVDRF DCLPASLVLL ILNKVEDVRS LGRCSAASKR LYGLVPLVHD VCVKIDCVVA VDGDAEDALN LSSPKPRNIL SNFFKLMLST
101: IVKPFHSMRS PNGAGRPLFP QLAQHSPAQV LRNFTHIRNL QIELPSENEP SSEDNGSMPE SFYTNGGLKL RVVWTISSLI AASTRHYLLR SIIKDHPTFV
201: SLVLTDADGQ GTLCMGAEQL KEFRENQLST SACSNRTQVP ACNMKLKYTP YLELPGGIAL QGATLVVIKP STDGTDGCHI SCKETDAFIS GAFDGPFKFA
301: AKALMKRRTY LLEMNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.