Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012314.1-P | Field mustard | cytosol | 93.08 | 93.08 |
| CDY46634 | Canola | cytosol | 77.67 | 88.85 |
| CDX91668 | Canola | cytosol | 74.84 | 74.61 |
| CDY41488 | Canola | cytosol | 73.58 | 73.35 |
| CDY38235 | Canola | cytosol | 72.64 | 71.3 |
| CDY21348 | Canola | cytosol | 72.64 | 71.3 |
| AT1G22220.1 | Thale cress | cytosol | 62.89 | 63.69 |
| CDY26850 | Canola | cytosol | 53.46 | 57.05 |
| CDY14629 | Canola | cytosol | 48.43 | 56.41 |
| CDX88418 | Canola | cytosol | 55.97 | 55.45 |
| CDX87476 | Canola | cytosol | 55.66 | 55.14 |
| CDY32130 | Canola | cytosol | 40.25 | 47.23 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 43.4 | 46.0 |
| Solyc04g072930.1.1 | Tomato | cytosol | 42.77 | 40.0 |
| PGSC0003DMT400024512 | Potato | cytosol | 42.45 | 39.71 |
| Zm00001d006501_P001 | Maize | cytosol | 24.53 | 35.78 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 37.42 | 33.71 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 36.16 | 32.58 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 36.16 | 32.58 |
| Os01t0812200-01 | Rice | cytosol | 35.85 | 32.29 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 35.85 | 32.2 |
| GSMUA_Achr10P... | Banana | cytosol | 35.85 | 32.2 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 35.22 | 32.18 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 35.85 | 32.02 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 35.85 | 32.02 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 35.85 | 32.02 |
| CDX78848 | Canola | cytosol | 9.75 | 31.96 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 35.53 | 31.74 |
| EES01639 | Sorghum | cytosol | 34.91 | 31.36 |
| Zm00001d038537_P001 | Maize | cytosol | 34.91 | 31.36 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 31.13 | 31.23 |
| EES19721 | Sorghum | cytosol | 34.59 | 31.07 |
| CDY33458 | Canola | cytosol | 34.91 | 30.83 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 34.59 | 30.64 |
| Zm00001d043125_P001 | Maize | cytosol | 33.33 | 30.29 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.65 | 30.23 |
| CDX77641 | Canola | cytosol | 34.28 | 30.11 |
| CDY43956 | Canola | cytosol | 35.22 | 30.03 |
| CDX87738 | Canola | cytosol | 35.22 | 30.03 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 33.96 | 29.75 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 33.96 | 29.43 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 34.28 | 29.14 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 33.96 | 29.11 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 34.59 | 28.95 |
| Os03t0321300-01 | Rice | cytosol | 34.91 | 28.91 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 33.33 | 28.88 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 33.33 | 28.57 |
| Zm00001d028957_P001 | Maize | cytosol | 31.13 | 28.45 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 31.45 | 28.33 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 32.7 | 28.26 |
| Os05t0490300-01 | Rice | mitochondrion | 36.48 | 25.78 |
| Zm00001d047573_P001 | Maize | plastid | 34.59 | 25.29 |
| Zm00001d043016_P001 | Maize | plastid | 20.13 | 25.1 |
| CDX99469 | Canola | nucleus | 16.67 | 23.35 |
| CDX78847 | Canola | cytosol | 16.35 | 21.85 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 35.22 | 15.01 |
Protein Annotations
| MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EnsemblPlants:CDY00435 | ProteinID:CDY00435 | ProteinID:CDY00435.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00110086001 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR31215 | SMART:SM00256 |
| SUPFAM:SSF81383 | UniParc:UPI0004EE0903 | SEG:seg | : | : | : |
Description
BnaC07g13910D
Coordinates
chrLK031918:+:1031260..1032373
Molecular Weight (calculated)
35085.3 Da
IEP (calculated)
7.463
GRAVY (calculated)
-0.150
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFDGLPDA IVVDILNKVG DVKTLHRCSS VSKRFNSLIP QSESLFVRLD QDVTTESRPD SPVSNIFQSL VKSFQGFLSL FSKPAKPIRF TNLSPNIPCK
101: ILSRFDRIKN LEVELPGGDV SLEKGAAVKW KAEFGKTLKT CVVVAFCSAS TVSSSSPDGE SDAIGLKTRV VWTINALMAA SSRHFLMSEV LKEHKEMESL
201: VMHDVGGEGT VVMRADGLRE FQKTEEARGG EADERLMKNR RSVVPNVRMS MRHAPSLKLK SGIYLESATL VIVRPSDKYS DFGDDELATE AFAGNCMYGE
301: AVVALLKREK INLEINSF
101: ILSRFDRIKN LEVELPGGDV SLEKGAAVKW KAEFGKTLKT CVVVAFCSAS TVSSSSPDGE SDAIGLKTRV VWTINALMAA SSRHFLMSEV LKEHKEMESL
201: VMHDVGGEGT VVMRADGLRE FQKTEEARGG EADERLMKNR RSVVPNVRMS MRHAPSLKLK SGIYLESATL VIVRPSDKYS DFGDDELATE AFAGNCMYGE
301: AVVALLKREK INLEINSF
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
Arabidopsis Description
AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.