Factsheet for Zm00001d043016_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004467_P001
Zm00001d005439_P001
Zm00001d005602_P001
Zm00001d019527_P005
Zm00001d025005_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Zm00001d004467_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d005439_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d005602_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d019527_P005	AT4G28720.1	21798944
AT1G78100.1	Zm00001d025005_P002	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006501_P001	Maize	cytosol	50.98	59.63
Zm00001d028957_P001	Maize	cytosol	66.67	48.85
EER94941	Sorghum	cytosol, peroxisome, plastid	67.84	45.53
TraesCS4B01G177100.1	Wheat	cytosol	64.71	44.47
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	63.53	44.02
HORVU4Hr1G052070.1	Barley	cytosol	63.14	43.87
Os03t0321300-01	Rice	cytosol	65.49	43.49
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	62.35	42.86
Zm00001d047573_P001	Maize	plastid	68.24	40.0
Zm00001d038537_P001	Maize	cytosol	48.24	34.75
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	46.67	33.62
GSMUA_Achr6P32090_001	Banana	cytosol	46.27	33.43
Zm00001d043125_P001	Maize	cytosol	45.49	33.14
VIT_18s0001g05310.t01	Wine grape	cytosol	34.12	29.0
Bra016384.1-P	Field mustard	cytosol	21.57	27.5
Zm00001d000314_P001	Maize	cytosol	43.92	27.18
Zm00001d043324_P001	Maize	cytosol	42.75	27.18
Zm00001d012644_P001	Maize	cytosol	43.14	26.83
Zm00001d010705_P001	Maize	cytosol	42.75	26.46
VIT_06s0009g03680.t01	Wine grape	cytosol	20.78	25.48
PGSC0003DMT400024512	Potato	cytosol	32.55	24.41
Solyc04g072930.1.1	Tomato	cytosol	32.55	24.41
CDY46634	Canola	cytosol	25.88	23.74
CDY26850	Canola	cytosol	26.67	22.82
CDY14629	Canola	cytosol	24.31	22.71
AT1G22220.1	Thale cress	cytosol	27.45	22.29
CDX88418	Canola	cytosol	27.06	21.5
Bra015630.1-P	Field mustard	cytosol	26.67	21.18
CDX87476	Canola	cytosol	26.67	21.18
AT1G78100.1	Thale cress	cytosol	27.45	20.96
VIT_06s0009g03690.t01	Wine grape	cytosol	27.84	20.76
Bra012314.1-P	Field mustard	cytosol	25.88	20.75
CDY41488	Canola	cytosol	25.88	20.69
Bra031373.1-P	Field mustard	cytosol	26.27	20.68
CDX91668	Canola	cytosol	25.49	20.38
CDY38235	Canola	cytosol	25.88	20.37
CDY21348	Canola	cytosol	25.88	20.37
CDY00435	Canola	cytosol	25.1	20.13
Bra008345.1-P	Field mustard	cytosol	24.31	19.56
VIT_06s0009g03670.t01	Wine grape	cytosol	25.88	19.35
PGSC0003DMT400097155	Potato	cytosol	24.71	18.0
CDY32130	Canola	cytosol	16.86	15.87
Zm00001d006500_P001	Maize	cytosol	19.61	12.35

Protein Annotations

EnsemblPlants:Zm00001d043016_P001	EnsemblPlants:Zm00001d043016_T001	EnsemblPlantsGene:Zm00001d043016	PANTHER:PTHR31215	PANTHER:PTHR31215:SF5	ProteinID:ONM36730.1
SEG:seg	UniParc:UPI0008448612	UniProt:A0A1D6N818	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box protein

Coordinates

chr3:+:186538284..186539449

Molecular Weight (calculated)

27052.3 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.026

Length

255 amino acids

Sequence
(BLAST)

001: MCCTVASSFS SPFSAIGRRA WSPDASPLPS ISVSALVPLV DDACLRIDRV IPADAADAGA PRPRAALSHL LESVLLAVLK PFAHCDAKSA SPQKHAQQQQ
101: QHHSPAQVLR NFSSIRSLRM ELPVSDVGTD DGVVLRWKAV FGSTLQSCVI LDGTRVDRAA AAGPPHAPSS APPAGDDDGG SIPESLYTNG GLKLRAVWTI
201: SSLIAAATRH YLLREIVKEH PTLERVALTD ADGPMKEAVA TLGKRHAYLL EMNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.