Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88418 | Canola | cytosol | 72.75 | 75.7 |
| Bra015630.1-P | Field mustard | cytosol | 72.16 | 75.08 |
| CDX87476 | Canola | cytosol | 72.16 | 75.08 |
| CDY26850 | Canola | cytosol | 66.77 | 74.83 |
| Bra008345.1-P | Field mustard | cytosol | 70.06 | 73.82 |
| CDY14629 | Canola | cytosol | 56.29 | 68.86 |
| AT1G22220.1 | Thale cress | cytosol | 58.98 | 62.74 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 46.11 | 51.33 |
| PGSC0003DMT400024512 | Potato | cytosol | 50.0 | 49.12 |
| Solyc04g072930.1.1 | Tomato | cytosol | 49.7 | 48.82 |
| Zm00001d006501_P001 | Maize | cytosol | 24.25 | 37.16 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 34.73 | 33.33 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 34.73 | 32.77 |
| Zm00001d038537_P001 | Maize | cytosol | 34.73 | 32.77 |
| Os01t0812200-01 | Rice | cytosol | 34.43 | 32.58 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 34.43 | 32.58 |
| EES19721 | Sorghum | cytosol | 34.13 | 32.2 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 34.13 | 32.02 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 34.13 | 32.02 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 33.83 | 31.74 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 33.83 | 31.74 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 33.53 | 31.73 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 33.53 | 31.73 |
| Zm00001d043125_P001 | Maize | cytosol | 32.93 | 31.43 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.23 | 31.36 |
| EES01639 | Sorghum | cytosol | 33.23 | 31.36 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 29.64 | 31.23 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 33.83 | 31.13 |
| GSMUA_Achr10P... | Banana | cytosol | 32.93 | 31.07 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 33.23 | 30.92 |
| AT4G18380.1 | Thale cress | cytosol | 34.73 | 30.53 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 34.73 | 30.53 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 33.53 | 30.52 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 33.83 | 30.46 |
| Os03t0321300-01 | Rice | cytosol | 34.73 | 30.21 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 33.23 | 30.16 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 33.23 | 29.92 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 31.14 | 29.46 |
| AT1G30200.2 | Thale cress | cytosol | 32.34 | 28.5 |
| Zm00001d028957_P001 | Maize | cytosol | 29.34 | 28.16 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 32.93 | 27.85 |
| Zm00001d043016_P001 | Maize | plastid | 20.96 | 27.45 |
| Zm00001d047573_P001 | Maize | plastid | 35.03 | 26.9 |
| Os05t0490300-01 | Rice | mitochondrion | 35.63 | 26.44 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 34.43 | 15.42 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:844146 | UniProt:A0A178VZX8 | ProteinID:AAG52096.1 | ProteinID:AEE36067.1 |
| ArrayExpress:AT1G78100 | EnsemblPlantsGene:AT1G78100 | RefSeq:AT1G78100 | TAIR:AT1G78100 | RefSeq:AT1G78100-TAIR-G | EnsemblPlants:AT1G78100.1 |
| TAIR:AT1G78100.1 | EMBL:AY054568 | EMBL:AY081694 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 |
| GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009987 | GO:GO:0010540 | GO:GO:0010541 | GO:GO:0016567 |
| GO:GO:0019538 | RefSeq:NP_565169.1 | ProteinID:OAP11827.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31215 | UniProt:Q9C9S2 | SUPFAM:SSF81383 |
| UniParc:UPI000009E30B | : | : | : | : | : |
Description
AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
Coordinates
chr1:+:29387672..29389222
Molecular Weight (calculated)
36554.9 Da
IEP (calculated)
5.061
GRAVY (calculated)
-0.080
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.