Factsheet for TraesCS3B01G368000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G011500.1
TraesCS2A01G533200.1
TraesCS2B01G010100.2
TraesCS2B01G562800.1
TraesCS2D01G012100.1
TraesCS2D01G535100.1
TraesCS4A01G313200.1
TraesCS5B01G566700.1
TraesCS7D01G038500.1
TraesCSU01G065000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	TraesCS2A01G011500.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2A01G533200.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2B01G010100.2	AT4G28720.1	21798944
AT1G78100.1	TraesCS2B01G562800.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2D01G012100.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS2D01G535100.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS4A01G313200.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS5B01G566700.1	AT4G28720.1	21798944
AT1G78100.1	TraesCS7D01G038500.1	AT4G28720.1	21798944
AT1G78100.1	TraesCSU01G065000.1	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G329900.1	Wheat	cytosol	96.61	96.07
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	93.5	92.2
Os01t0812200-01	Rice	cytosol	84.18	84.42
TraesCS1B01G318500.1	Wheat	cytosol	82.77	82.3
EES01639	Sorghum	cytosol	80.23	80.23
Zm00001d043125_P001	Maize	cytosol	78.53	79.43
GSMUA_Achr7P21580_001	Banana	cytosol	70.34	70.54
GSMUA_Achr10P...	Banana	cytosol	65.54	65.54
TraesCS4B01G177100.1	Wheat	cytosol	58.76	56.06
VIT_18s0001g05310.t01	Wine grape	cytosol	38.7	45.67
TraesCS3B01G340400.1	Wheat	cytosol	47.74	42.04
TraesCS1B01G342700.1	Wheat	cytosol	47.74	40.72
Bra016384.1-P	Field mustard	cytosol	22.03	39.0
CDY46634	Canola	cytosol	29.66	37.77
AT1G22220.1	Thale cress	cytosol	33.05	37.26
CDY26850	Canola	cytosol	30.79	36.58
CDY21348	Canola	cytosol	33.33	36.42
Bra012314.1-P	Field mustard	cytosol	32.49	36.16
CDY00435	Canola	cytosol	32.2	35.85
CDY41488	Canola	cytosol	32.2	35.74
Solyc04g072930.1.1	Tomato	cytosol	34.18	35.59
CDY38235	Canola	cytosol	32.49	35.49
Bra031373.1-P	Field mustard	cytosol	32.49	35.49
CDX91668	Canola	cytosol	31.92	35.42
VIT_06s0009g03690.t01	Wine grape	cytosol	34.18	35.38
PGSC0003DMT400024512	Potato	cytosol	33.9	35.29
CDY14629	Canola	cytosol	26.84	34.8
AT1G78100.1	Thale cress	cytosol	32.77	34.73
CDX88418	Canola	cytosol	31.36	34.58
Bra015630.1-P	Field mustard	cytosol	30.79	33.96
CDX87476	Canola	cytosol	30.79	33.96
Bra008345.1-P	Field mustard	cytosol	30.23	33.75
VIT_06s0009g03680.t01	Wine grape	cytosol	19.49	33.17
VIT_06s0009g03670.t01	Wine grape	cytosol	30.79	31.96
PGSC0003DMT400097155	Potato	cytosol	30.23	30.57
CDY32130	Canola	cytosol	20.62	26.94

Protein Annotations

EnsemblPlants:TraesCS3B01G368000.1	EnsemblPlantsGene:TraesCS3B01G368000	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr3B:+:580205750..580206814

Molecular Weight (calculated)

38364.6 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.072

Length

354 amino acids

Sequence
(BLAST)

001: MHPKARIHAD PAAPELDRID CLPDSLVLLI LNKLEDVHSL GRCAAVSKRF NDLVPLVHDV YVKIDRVVAV DGDPDDALNL SSAKPRHIFS HLFKLMLFTI
101: AKPFHGMRGP GGAGGRPLFP RLAQHSPVQV LRGFSHVRNL RVELPSGDVG TEEGVLLKWR ARYGSTLQSC VILGGTLVDR KPAGHEPSAE DGGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII KEHPTLRSLV LADADGQGTL CMGAEQLAEF RENRLSASAC SNRTQVPACS MKLKYAPYLE LPGGLGLQGA
301: TLVVIKPSGD GAGGCHVGRK ETDAFVSGAF DGPFRFAAKA LMKRRTYLLE MNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.