Factsheet for TraesCS3B01G340400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G306000.1	Wheat	cytosol	96.27	96.51
TraesCS3A01G296700.1	Wheat	cytosol	95.27	95.51
Os01t0770400-01	Rice	cytosol	78.11	79.29
HORVU3Hr1G075050.2	Barley	plastid	88.81	74.53
Zm00001d043324_P001	Maize	cytosol	70.65	70.82
OQU78753	Sorghum	cytosol	64.68	70.08
EES03683	Sorghum	cytosol	71.89	69.14
Zm00001d012644_P001	Maize	cytosol	69.4	68.05
EES01093	Sorghum	cytosol	69.4	66.75
Solyc02g070480.2.1	Tomato	cytosol	31.09	65.1
CDX78848	Canola	cytosol	14.93	61.86
TraesCS1B01G342700.1	Wheat	cytosol	63.43	61.45
GSMUA_Achr4P31500_001	Banana	cytosol	50.75	61.26
GSMUA_Achr2P17340_001	Banana	cytosol	53.23	60.11
GSMUA_Achr5P02540_001	Banana	cytosol	49.75	59.7
GSMUA_Achr7P07910_001	Banana	cytosol	56.47	59.27
Bra022022.1-P	Field mustard	cytosol	53.98	58.49
CDX87738	Canola	cytosol	54.23	58.45
CDY43956	Canola	cytosol	53.98	58.18
KRH11156	Soybean	cytosol, nucleus, vacuole	55.22	57.66
GSMUA_Achr4P22940_001	Banana	cytosol	53.23	57.37
CDY33458	Canola	cytosol	51.24	57.22
VIT_10s0003g03880.t01	Wine grape	cytosol	56.72	57.14
AT5G46170.1	Thale cress	cytosol, plastid	55.72	56.71
KRH21091	Soybean	cytosol	54.48	56.59
CDX77641	Canola	cytosol	50.75	56.35
Bra013303.1-P	Field mustard	cytosol	52.74	56.23
AT4G18380.1	Thale cress	cytosol	52.99	56.05
Bra025034.1-P	Field mustard	cytosol	51.24	55.08
PGSC0003DMT400054525	Potato	cytosol	50.25	55.04
AT1G30200.2	Thale cress	cytosol	51.74	54.88
CDY26286	Canola	cytosol, nucleus, vacuole	50.75	54.55
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	50.75	54.55
CDX99890	Canola	cytosol, golgi, nucleus	49.75	54.5
PGSC0003DMT400049024	Potato	cytosol	50.25	51.93
GSMUA_Achr11P...	Banana	extracellular	9.7	51.32
Solyc08g048430.2.1	Tomato	cytosol	41.54	51.23
TraesCS1B01G318500.1	Wheat	cytosol	42.54	48.03
TraesCS3B01G368000.1	Wheat	cytosol	42.04	47.74
GSMUA_Achr7P01170_001	Banana	mitochondrion	48.51	47.68
TraesCS4B01G177100.1	Wheat	cytosol	38.56	41.78
CDX99469	Canola	nucleus	21.14	37.44
CDX78847	Canola	cytosol	18.41	31.09
PGSC0003DMT400002031	Potato	extracellular	9.7	24.38
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.21	20.62

Protein Annotations

EnsemblPlants:TraesCS3B01G340400.1	EnsemblPlantsGene:TraesCS3B01G340400	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr3B:-:547058015..547059223

Molecular Weight (calculated)

42757.1 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.050

Length

402 amino acids

Sequence
(BLAST)

001: MEEGREGWPS AAAAAGEAVG VEEGEEDQFD RLPDAVLLDV FNRIGDVKAL GRCALVSRRF HDLVPLVDSV FVRVDCVIPD EPAPSSAGSP QAAAPSRGRG
101: ALAHIARLVL GGIVRPIQAL GQILSPTLAI VSRRSVAPPP ASPPPPAGDI SHHSPSEVLR SFKELRSLRI ELPTGELGID DGVLLKWKAD FGSTLGSCVI
201: LGASSVSSKP LQPPMSSPDA ADSEGTSLDD NREPEELASI PESLHTNGGL KLRVVWTISS LIAASARHYL LQPIIADHEM LDSLNLTDAD GQGVLTMDKS
301: QLQELRVRPV SVSGNSHRTL MPALIMRLWY APHIELPGGV LLKGATLVAI RPSDDVLREG GGVEAAGPAG ASWISDAFEE PYRTAAKVLF KRRTYSLEMN
401: SF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.