Factsheet for GSMUA_Achr7P01170_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31500_001	Banana	cytosol	56.48	69.37
GSMUA_Achr5P02540_001	Banana	cytosol	55.75	68.06
GSMUA_Achr4P22940_001	Banana	cytosol	60.39	66.22
GSMUA_Achr11P...	Banana	extracellular	11.98	64.47
Solyc02g070480.2.1	Tomato	cytosol	28.61	60.94
CDX78848	Canola	cytosol	14.18	59.79
GSMUA_Achr2P17340_001	Banana	cytosol	50.61	58.15
GSMUA_Achr7P07910_001	Banana	cytosol	53.79	57.44
CDY33458	Canola	cytosol	45.72	51.94
KRH11156	Soybean	cytosol, nucleus, vacuole	48.66	51.69
KRH21091	Soybean	cytosol	48.9	51.68
CDX77641	Canola	cytosol	45.72	51.66
Bra025034.1-P	Field mustard	cytosol	46.21	50.53
Os01t0770400-01	Rice	cytosol	48.9	50.51
CDX87738	Canola	cytosol	45.72	50.13
CDX99890	Canola	cytosol, golgi, nucleus	44.74	49.86
OQU78753	Sorghum	cytosol	44.99	49.6
Bra022022.1-P	Field mustard	cytosol	44.99	49.6
Zm00001d043324_P001	Maize	cytosol	48.41	49.38
CDY43956	Canola	cytosol	44.99	49.33
PGSC0003DMT400054525	Potato	cytosol	44.25	49.32
TraesCS3A01G296700.1	Wheat	cytosol	48.17	49.13
TraesCS3D01G306000.1	Wheat	cytosol	48.17	49.13
VIT_10s0003g03880.t01	Wine grape	cytosol	47.92	49.12
Bra013303.1-P	Field mustard	cytosol	45.23	49.07
CDY26286	Canola	cytosol, nucleus, vacuole	44.5	48.66
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	44.5	48.66
AT5G46170.1	Thale cress	cytosol, plastid	46.94	48.61
Os05t0510400-02	Rice	cytosol	48.9	48.54
TraesCS3B01G340400.1	Wheat	cytosol	47.68	48.51
EES03683	Sorghum	cytosol	49.14	48.09
AT4G18380.1	Thale cress	cytosol	44.5	47.89
Zm00001d012644_P001	Maize	cytosol	47.92	47.8
EES01093	Sorghum	cytosol	48.41	47.37
AT1G30200.2	Thale cress	cytosol	43.28	46.7
TraesCS1D01G331400.1	Wheat	cytosol	48.17	46.14
TraesCS1B01G342700.1	Wheat	cytosol	46.7	46.02
Zm00001d000314_P001	Maize	cytosol	46.21	45.87
Zm00001d010705_P001	Maize	cytosol	45.97	45.63
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	46.94	45.61
PGSC0003DMT400049024	Potato	cytosol	43.28	45.5
GSMUA_Achr7P21580_001	Banana	cytosol	39.12	45.33
KXG22318	Sorghum	cytosol	46.7	44.94
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	38.14	44.83
GSMUA_Achr6P32090_001	Banana	cytosol	37.9	43.91
GSMUA_Achr10P...	Banana	cytosol	37.16	42.94
GSMUA_Achr3P18400_001	Banana	cytosol	37.65	42.42
HORVU3Hr1G075050.2	Barley	plastid	48.9	41.75
Solyc08g048430.2.1	Tomato	cytosol	33.25	41.72
GSMUA_Achr10P...	Banana	cytosol	28.85	40.97
HORVU1Hr1G077600.2	Barley	plastid	47.43	39.84
CDX99469	Canola	nucleus	19.07	34.36
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	9.78	25.0
CDX78847	Canola	cytosol	14.43	24.79
PGSC0003DMT400002031	Potato	extracellular	9.54	24.38
GSMUA_Achr6P15980_001	Banana	mitochondrion	37.65	20.64

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01170_001	EnsemblPlants:GSMUA_Achr7T01170_001	EnsemblPlantsGene:GSMUA_Achr7G01170_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002959C69
UniProt:M0TDQ7	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein At1g30200 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01170_001]

Coordinates

chr7:-:910402..913612

Molecular Weight (calculated)

45252.2 Da

IEP (calculated)

6.985

GRAVY (calculated)

-0.098

Length

409 amino acids

Sequence
(BLAST)

001: MIINLKLSYR RQLQNLSSFL ITPFKSRAPG KPTVRVWVSL RSRHLCFSTV AGSQLCFSIP LVEFSDPMSS GGLAAADLDG LRRGRWDPAA AEEGIDHFDR
101: LPDSVLLVVF NRVGDIKALG RCCIVSRRFH ALVRLVDDIV VRVDCVVSDE PSLFPDTEAD SAAAGPDKPR GVFFHLARVS ASPSSSSSTP SSDVSHHSPA
201: EVLKNFKEIR RLRIELPDSE LGVDDGVLLK WRADFGSTLE SCVILGASSS FYNDGSLKRR VVWTISSLIA ASARHYLLHP IVADHETLES LDLIDADGQG
301: LLTMDRRQLQ ELKMKPWMAS RSSQRTLLPA LSMRLWYADQ LELPNGMVLR GATLLAIRPS EEQMSEAGFS GSIGSSDNCW VSDAFEEPYK SATSTLMKRR
401: TYCLEMNSF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.