Factsheet for GSMUA_Achr10P28790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07910_001	Banana	cytosol	56.94	42.82
GSMUA_Achr5P02540_001	Banana	cytosol	41.32	35.52
GSMUA_Achr4P22940_001	Banana	cytosol	44.79	34.58
GSMUA_Achr2P17340_001	Banana	cytosol	42.01	33.99
Solyc08g048430.2.1	Tomato	cytosol	38.19	33.74
CDY33458	Canola	cytosol	41.67	33.33
Bra025034.1-P	Field mustard	cytosol	43.06	33.16
GSMUA_Achr4P31500_001	Banana	cytosol	38.19	33.03
CDX87738	Canola	cytosol	42.36	32.71
CDX77641	Canola	cytosol	40.97	32.6
CDY43956	Canola	cytosol	42.01	32.44
CDX99890	Canola	cytosol, golgi, nucleus	41.32	32.43
Bra022022.1-P	Field mustard	cytosol	41.67	32.34
KRH11156	Soybean	cytosol, nucleus, vacuole	42.71	31.95
AT5G46170.1	Thale cress	cytosol, plastid	43.4	31.65
CDY26286	Canola	cytosol, nucleus, vacuole	40.97	31.55
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	40.97	31.55
KRH21091	Soybean	cytosol	42.36	31.52
AT1G30200.2	Thale cress	cytosol	40.97	31.13
AT4G18380.1	Thale cress	cytosol	40.97	31.05
Bra013303.1-P	Field mustard	cytosol	40.62	31.03
VIT_10s0003g03880.t01	Wine grape	cytosol	42.71	30.83
PGSC0003DMT400054525	Potato	cytosol	38.89	30.52
PGSC0003DMT400049024	Potato	cytosol	40.28	29.82
GSMUA_Achr7P01170_001	Banana	mitochondrion	40.97	28.85
CDX99469	Canola	nucleus	22.57	28.63
PGSC0003DMT400002031	Potato	extracellular	14.58	26.25
CDX78847	Canola	cytosol	21.18	25.63
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	30.21	25.0
GSMUA_Achr7P21580_001	Banana	cytosol	30.56	24.93
GSMUA_Achr6P32090_001	Banana	cytosol	29.86	24.36
GSMUA_Achr3P18400_001	Banana	cytosol	30.56	24.24
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	13.19	23.75
GSMUA_Achr10P...	Banana	cytosol	28.82	23.45
Solyc02g070480.2.1	Tomato	cytosol	14.24	21.35
Zm00001d006500_P001	Maize	cytosol	27.78	19.75
GSMUA_Achr6P15980_001	Banana	mitochondrion	30.9	11.93
CDX78848	Canola	cytosol	3.12	9.28
GSMUA_Achr11P...	Banana	extracellular	1.39	5.26

Protein Annotations

EnsemblPlants:GSMUA_Achr10P28790_001	EnsemblPlants:GSMUA_Achr10T28790_001	EnsemblPlantsGene:GSMUA_Achr10G28790_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2
PFAM:PF12937	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002950DE4	UniProt:M0RMA3	MapMan:19.2.2.8.1.4.6

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G28790_001]

Coordinates

chr10:-:31491711..31495312

Molecular Weight (calculated)

31337.2 Da

IEP (calculated)

5.078

GRAVY (calculated)

-0.026

Length

288 amino acids

Sequence
(BLAST)

001: MVSWDPMTSP GGLAEAEDLR RWRRHPAEAE DNEEEEIDHF DRLPDSVLLL VFNRVGDVKD LGRCCVVCSR FHSLVRLVDS VLVRVDCVIS DDPSPSPAGV
101: AGGDSARGVF SHLARIVLGS IARPFQALGH ILAPSAGVAS DRRSSPSLLS SSSSPLSDFS HHSPAEVLKN FKEIHGLRIE LPAGELGVDD GVLLKWKAEF
201: GSTLDSCLIL SASSVLSSAV GQVLDFRCIR RAIQVSCGDA CEGEDLLSRD EFLLRLEKRE PKSIFGRYCC MTDGASHAFV DIFLGYEK

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.