Factsheet for Bra022022.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43956	Canola	cytosol	99.19	98.66
Bra025034.1-P	Field mustard	cytosol	79.25	78.61
AT5G46170.1	Thale cress	cytosol, plastid	82.48	77.47
Bra013303.1-P	Field mustard	cytosol	77.63	76.39
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	71.7	71.12
VIT_10s0003g03880.t01	Wine grape	cytosol	74.39	69.17
KRH11156	Soybean	cytosol, nucleus, vacuole	70.35	67.79
KRH21091	Soybean	cytosol	70.62	67.7
GSMUA_Achr5P02540_001	Banana	cytosol	51.21	56.72
GSMUA_Achr4P31500_001	Banana	cytosol	50.67	56.46
GSMUA_Achr4P22940_001	Banana	cytosol	56.33	56.03
GSMUA_Achr2P17340_001	Banana	cytosol	53.64	55.9
GSMUA_Achr7P07910_001	Banana	cytosol	57.68	55.87
Os05t0510400-02	Rice	cytosol	61.46	55.34
TraesCS3A01G296700.1	Wheat	cytosol	59.3	54.86
TraesCS3B01G340400.1	Wheat	cytosol	58.49	53.98
GSMUA_Achr11P...	Banana	extracellular	11.05	53.95
TraesCS3D01G306000.1	Wheat	cytosol	58.22	53.87
Os01t0770400-01	Rice	cytosol	56.87	53.28
Zm00001d000314_P001	Maize	cytosol	59.03	53.16
Zm00001d043324_P001	Maize	cytosol	57.41	53.12
Zm00001d010705_P001	Maize	cytosol	58.49	52.67
OQU78753	Sorghum	cytosol	52.29	52.29
Zm00001d012644_P001	Maize	cytosol	57.68	52.2
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	58.49	51.54
TraesCS1D01G331400.1	Wheat	cytosol	59.03	51.29
TraesCS1B01G342700.1	Wheat	cytosol	57.14	51.08
KXG22318	Sorghum	cytosol	58.22	50.82
EES03683	Sorghum	cytosol	57.14	50.72
EES01093	Sorghum	cytosol	55.8	49.52
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.6	44.99
HORVU3Hr1G075050.2	Barley	plastid	57.41	44.47
HORVU1Hr1G077600.2	Barley	plastid	58.22	44.35
GSMUA_Achr10P...	Banana	cytosol	32.34	41.67
Bra016384.1-P	Field mustard	cytosol	20.75	38.5
Bra012314.1-P	Field mustard	cytosol	30.46	35.53
Bra031373.1-P	Field mustard	cytosol	29.92	34.26
Bra015630.1-P	Field mustard	cytosol	28.84	33.33
Bra008345.1-P	Field mustard	cytosol	26.68	31.23
Zm00001d006500_P001	Maize	cytosol	28.3	25.93

Protein Annotations

EnsemblPlants:Bra022022.1	EnsemblPlants:Bra022022.1-P	EnsemblPlantsGene:Bra022022	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2
PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002545D61	UniProt:M4DZS5
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

AT5G46170 (E=2e-119) | F-box family protein

Coordinates

chrA02:-:18619913..18621028

Molecular Weight (calculated)

40406.4 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.074

Length

371 amino acids

Sequence
(BLAST)

001: MAVIPRSDPP SRIHPQPQPL EQTDHFDRLP DSILLLVLNR IADVKSLGRC RAVSRRFHSL VPQVENVVVR VDCVISDDDN SSLSSIKPPS AASSSFSAVF
101: SLVVGGIVKP LQALGQLLGT TSRSSSLSTS GEIEQGGVTH HSPTQVLRNF DEIRYLRIEL PSGELGIDEG VLLKWRAEFG STLDNCVILG ASSVIQPSPM
201: HISQTLEAPD ASEDNGSIPE SFYTNGGLKL RVVWTISSLI AASARHYLLQ PIISEHKTLK SLVLTDSDGQ GVLSMNKDQL EELRVKPLLA SSASKRTLVP
301: ALNMRLWYAP SLVLPDGTVL KGATLVAIRP SESNKDVSDA NWVSSAFEEP YETAAKMLVK RRTYCLEMNS F

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.