Factsheet for GSMUA_Achr5P02540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31500_001	Banana	cytosol	71.34	71.77
GSMUA_Achr4P22940_001	Banana	cytosol	68.96	61.93
Solyc02g070480.2.1	Tomato	cytosol	35.22	61.46
GSMUA_Achr11P...	Banana	extracellular	13.73	60.53
GSMUA_Achr2P17340_001	Banana	cytosol	62.69	58.99
CDX78848	Canola	cytosol	17.01	58.76
GSMUA_Achr7P07910_001	Banana	cytosol	65.97	57.7
GSMUA_Achr7P01170_001	Banana	mitochondrion	68.06	55.75
CDX77641	Canola	cytosol	56.42	52.21
CDX87738	Canola	cytosol	57.61	51.74
CDY33458	Canola	cytosol	55.22	51.39
Bra022022.1-P	Field mustard	cytosol	56.72	51.21
Os01t0770400-01	Rice	cytosol	60.3	51.01
Os05t0510400-02	Rice	cytosol	62.69	50.97
CDY43956	Canola	cytosol	56.72	50.94
KRH11156	Soybean	cytosol, nucleus, vacuole	57.91	50.39
KRH21091	Soybean	cytosol	58.21	50.39
PGSC0003DMT400054525	Potato	cytosol	54.93	50.14
TraesCS3A01G296700.1	Wheat	cytosol	59.7	49.88
VIT_10s0003g03880.t01	Wine grape	cytosol	59.4	49.87
Bra013303.1-P	Field mustard	cytosol	56.12	49.87
CDX99890	Canola	cytosol, golgi, nucleus	54.63	49.86
TraesCS3B01G340400.1	Wheat	cytosol	59.7	49.75
Bra025034.1-P	Field mustard	cytosol	55.52	49.73
TraesCS3D01G306000.1	Wheat	cytosol	59.1	49.38
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	54.63	48.93
CDY26286	Canola	cytosol, nucleus, vacuole	54.63	48.93
AT5G46170.1	Thale cress	cytosol, plastid	57.61	48.86
AT4G18380.1	Thale cress	cytosol	55.22	48.68
Zm00001d043324_P001	Maize	cytosol	57.91	48.38
Zm00001d010705_P001	Maize	cytosol	59.4	48.3
Zm00001d012644_P001	Maize	cytosol	59.1	48.29
OQU78753	Sorghum	cytosol	53.13	47.98
Zm00001d000314_P001	Maize	cytosol	58.81	47.82
TraesCS1B01G342700.1	Wheat	cytosol	59.1	47.71
PGSC0003DMT400049024	Potato	cytosol	55.22	47.56
AT1G30200.2	Thale cress	cytosol	53.43	47.23
EES03683	Sorghum	cytosol	58.51	46.89
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	58.81	46.79
TraesCS1D01G331400.1	Wheat	cytosol	59.1	46.37
EES01093	Sorghum	cytosol	57.01	45.69
KXG22318	Sorghum	cytosol	57.91	45.65
Solyc08g048430.2.1	Tomato	cytosol	42.39	43.56
GSMUA_Achr7P21580_001	Banana	cytosol	45.07	42.78
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	44.18	42.53
GSMUA_Achr6P32090_001	Banana	cytosol	44.18	41.93
HORVU3Hr1G075050.2	Barley	plastid	59.1	41.34
GSMUA_Achr3P18400_001	Banana	cytosol	44.78	41.32
GSMUA_Achr10P...	Banana	cytosol	35.52	41.32
HORVU1Hr1G077600.2	Barley	plastid	58.81	40.45
GSMUA_Achr10P...	Banana	cytosol	42.09	39.83
CDX99469	Canola	nucleus	22.99	33.92
CDX78847	Canola	cytosol	19.4	27.31
PGSC0003DMT400002031	Potato	extracellular	12.24	25.62
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	11.64	24.38
GSMUA_Achr6P15980_001	Banana	mitochondrion	43.88	19.71

Protein Annotations

EnsemblPlants:GSMUA_Achr5P02540_001	EnsemblPlants:GSMUA_Achr5T02540_001	EnsemblPlantsGene:GSMUA_Achr5G02540_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0002968D7C	UniProt:M0SV33	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein At1g30200 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02540_001]

Coordinates

chr5:-:1618273..1620954

Molecular Weight (calculated)

36970.4 Da

IEP (calculated)

6.435

GRAVY (calculated)

-0.080

Length

335 amino acids

Sequence
(BLAST)

001: MSSGAVGAAD PDGLRPLRWD PAVEEEGIDH FDRLPDSVLL VIFNRIGDVK TLGRCCAVYR RFHDLAPLVD DVVVRVDCVI SDDPSPSAPG GGFDKPHSVF
101: SHFARFSGLF SSSSPEVSHH SPTEVLKNFK EIRRLRIELP YGELGVDDGV LLKWKADFGC TLESCVILGA SSVVSSCSIL KRRVVWTISS LIAASARHYL
201: LHPIVADNET LERLDLTDAD GQGLLTLNRR QLQELRTKPV MSSGSSHRTL LPALNMRLWY AHQLELPGEM VLKGATLLAI RPSEERMGEA VGGVVGQSIG
301: FSDGCWVSDT FEEPYRTAIR MLMKRKTHSL EMNSF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.