Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g048430.2.1 | Tomato | cytosol | 71.47 | 85.28 |
| PGSC0003DMT400054525 | Potato | cytosol | 73.52 | 77.93 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 64.01 | 67.85 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 66.07 | 66.75 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 67.87 | 66.17 |
| KRH21091 | Soybean | cytosol | 65.55 | 65.89 |
| Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 62.72 | 65.24 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 62.72 | 65.24 |
| AT1G30200.2 | Thale cress | cytosol | 63.24 | 64.91 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 48.84 | 57.06 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 52.19 | 57.02 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 53.98 | 56.3 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 47.56 | 55.22 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 53.47 | 54.31 |
| GSMUA_Achr11P... | Banana | extracellular | 10.28 | 52.63 |
| Os05t0510400-02 | Rice | cytosol | 55.53 | 52.43 |
| Os01t0770400-01 | Rice | cytosol | 52.7 | 51.77 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 52.19 | 50.62 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 51.93 | 50.25 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 51.67 | 50.12 |
| Zm00001d000314_P001 | Maize | cytosol | 52.96 | 50.0 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 53.73 | 49.64 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 52.96 | 49.64 |
| Zm00001d010705_P001 | Maize | cytosol | 52.44 | 49.51 |
| KXG22318 | Sorghum | cytosol | 53.47 | 48.94 |
| OQU78753 | Sorghum | cytosol | 46.53 | 48.79 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 53.21 | 48.48 |
| PGSC0003DMT400002031 | Potato | extracellular | 19.79 | 48.12 |
| Zm00001d012644_P001 | Maize | cytosol | 50.64 | 48.05 |
| Zm00001d043324_P001 | Maize | cytosol | 49.36 | 47.88 |
| EES03683 | Sorghum | cytosol | 50.13 | 46.65 |
| EES01093 | Sorghum | cytosol | 49.36 | 45.93 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 45.5 | 43.28 |
| HORVU1Hr1G077600.2 | Barley | plastid | 53.98 | 43.12 |
| HORVU3Hr1G075050.2 | Barley | plastid | 51.67 | 41.96 |
| GSMUA_Achr10P... | Banana | cytosol | 29.82 | 40.28 |
| PGSC0003DMT400054900 | Potato | extracellular, plasma membrane | 15.42 | 37.5 |
| PGSC0003DMT400024512 | Potato | cytosol | 32.39 | 37.06 |
| PGSC0003DMT400097155 | Potato | cytosol | 30.85 | 34.29 |
| Zm00001d006500_P001 | Maize | cytosol | 26.22 | 25.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400049024 | EnsemblPlantsGene:PGSC0003DMG400019053 | EntrezGene:102581893 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 |
| PFAM:PF12937 | PGSC:PGSC0003DMG400019053 | RefSeq:XP_006355407.1 | RefSeq:XP_015167838.1 | SEG:seg | SUPFAM:SSF81383 |
| UniParc:UPI000296E5C5 | UniProt:M1BN57 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019053]
Coordinates
chr8:+:13920090..13923629
Molecular Weight (calculated)
42252.4 Da
IEP (calculated)
5.264
GRAVY (calculated)
-0.082
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSKSDLRS TIYPEPVDHF DQLPDPVLLL IFNKIGDVKT LGRCCGVCSR FHSLVPQVDN VVVRVDCVIS DDDDASSSSS SSSSSSAASS DKSRHPISSL
101: FRLVFLGLVK PFQSLTQLIS ISSRRCTASS SLVDDDFEQN SVTHHSPTQV LKNFDEIKLL RIELPSGELG IDEGALLKWR ADFGSTLDNC VILGASSVIQ
201: PVSIGDLVEE QCGIGSNSNI LGDGNGETDN GSIPESFYTN GGLKLRVVWT ISSLIAASAR HYLLQPIIAE HKKLESLVLT DVDGQGVLCM NREQLEELRV
301: KPLSASSASK RTMVPALNMR LWYAPHLELP DGTVLKGATL VAIRPSEQPK KEVVGPDGNW VAAAFEEPYG TAARMLVKRR TYCLEMNSF
101: FRLVFLGLVK PFQSLTQLIS ISSRRCTASS SLVDDDFEQN SVTHHSPTQV LKNFDEIKLL RIELPSGELG IDEGALLKWR ADFGSTLDNC VILGASSVIQ
201: PVSIGDLVEE QCGIGSNSNI LGDGNGETDN GSIPESFYTN GGLKLRVVWT ISSLIAASAR HYLLQPIIAE HKKLESLVLT DVDGQGVLCM NREQLEELRV
301: KPLSASSASK RTMVPALNMR LWYAPHLELP DGTVLKGATL VAIRPSEQPK KEVVGPDGNW VAAAFEEPYG TAARMLVKRR TYCLEMNSF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.