Factsheet for Zm00001d000314_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010705_P001	Maize	cytosol	87.14	87.14
KXG22318	Sorghum	cytosol	84.95	82.35
Os05t0510400-02	Rice	cytosol	73.3	73.3
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	70.39	68.88
TraesCS1B01G342700.1	Wheat	cytosol	67.48	66.99
TraesCS1D01G331400.1	Wheat	cytosol	68.45	66.04
Solyc02g070480.2.1	Tomato	cytosol	29.61	63.54
Zm00001d043324_P001	Maize	cytosol	60.44	62.09
Zm00001d012644_P001	Maize	cytosol	59.95	60.24
HORVU1Hr1G077600.2	Barley	plastid	70.63	59.75
Bra022022.1-P	Field mustard	cytosol	53.16	59.03
GSMUA_Achr5P02540_001	Banana	cytosol	47.82	58.81
CDX78848	Canola	cytosol	13.84	58.76
GSMUA_Achr7P07910_001	Banana	cytosol	54.61	58.75
CDX87738	Canola	cytosol	53.16	58.71
CDY43956	Canola	cytosol	52.91	58.45
CDY33458	Canola	cytosol	50.97	58.33
KRH21091	Soybean	cytosol	54.37	57.88
CDX77641	Canola	cytosol	50.73	57.73
KRH11156	Soybean	cytosol, nucleus, vacuole	53.88	57.66
GSMUA_Achr4P31500_001	Banana	cytosol	46.6	57.66
Bra025034.1-P	Field mustard	cytosol	52.18	57.49
GSMUA_Achr2P17340_001	Banana	cytosol	49.51	57.3
GSMUA_Achr4P22940_001	Banana	cytosol	51.7	57.1
CDX99890	Canola	cytosol, golgi, nucleus	50.73	56.95
AT5G46170.1	Thale cress	cytosol, plastid	54.37	56.71
AT4G18380.1	Thale cress	cytosol	52.18	56.58
Bra013303.1-P	Field mustard	cytosol	51.46	56.23
AT1G30200.2	Thale cress	cytosol	51.7	56.2
CDY26286	Canola	cytosol, nucleus, vacuole	50.97	56.15
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	50.97	56.15
VIT_10s0003g03880.t01	Wine grape	cytosol	53.64	55.39
GSMUA_Achr11P...	Banana	extracellular	10.19	55.26
PGSC0003DMT400054525	Potato	cytosol	49.03	55.04
PGSC0003DMT400049024	Potato	cytosol	50.0	52.96
Solyc08g048430.2.1	Tomato	cytosol	39.56	50.0
Zm00001d006501_P001	Maize	cytosol	25.97	49.08
Zm00001d038537_P001	Maize	cytosol	40.05	46.61
GSMUA_Achr7P01170_001	Banana	mitochondrion	45.87	46.21
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	39.08	45.48
Zm00001d043125_P001	Maize	cytosol	38.35	45.14
Zm00001d043016_P001	Maize	plastid	27.18	43.92
Zm00001d006500_P001	Maize	cytosol	39.32	40.0
Zm00001d028957_P001	Maize	cytosol	33.74	39.94
CDX99469	Canola	nucleus	20.63	37.44
Zm00001d047573_P001	Maize	plastid	39.08	37.01
CDX78847	Canola	cytosol	18.93	32.77
PGSC0003DMT400002031	Potato	extracellular	11.41	29.38
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	9.22	23.75

Protein Annotations

EnsemblPlants:Zm00001d000314_P001	EnsemblPlants:Zm00001d000314_T001	EnsemblPlantsGene:Zm00001d000314	EntrezGene:103630579	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937	PFscan:PS50181	SEG:seg
SUPFAM:SSF81383	UniParc:UPI0002220F3C	UniProt:A0A1X7YHX7	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box protein

Coordinates

chrB73V4_ctg51:+:58448..59686

Molecular Weight (calculated)

43930.9 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.101

Length

412 amino acids

Sequence
(BLAST)

001: MSEDPVGSRR WRCDLGGDER WLSGAAGDDQ FDRLPDALLL VIFNRIGDVK ALGRCSLVSR RFHELVPLVD SVLVRVDCVI PDEPPSSSSS SSTPSSPTAS
101: VRARGVFSQI ARIVLGGIVK PIQALGQILS PANSASGFPA SAASSLSSSS SSSSPLPAGD VSHHSPSEVL RSFKELRHLR IELPAGELGM DDGVMLKWKA
201: DFGSTLGSCV ILGASSASPS PSPSSAGSDS PSAAPSDDSG HTEPDECDDS GSIPESFYTN GGFKLRVVWS ISSLIAAAAR HYLLQPIIAD HMTLETLDLT
301: DADGQGVLTM DKCQLQELRV RPVSTSRGSH RTLMPELCMW LWYAPCIELP GGLLLNGATL VAIKPSEEGT GDTVWNETAD AAWVLDAFEE PYRTAAKMLL
401: KRRTYSLEMN SF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.