Factsheet for Zm00001d047573_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004467_P001
Zm00001d005439_P001
Zm00001d005602_P001
Zm00001d019527_P005
Zm00001d025005_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Zm00001d004467_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d005439_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d005602_P001	AT4G28720.1	21798944
AT1G78100.1	Zm00001d019527_P005	AT4G28720.1	21798944
AT1G78100.1	Zm00001d025005_P002	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94941	Sorghum	cytosol, peroxisome, plastid	74.25	85.0
Zm00001d006501_P001	Maize	cytosol	40.92	81.65
Zm00001d028957_P001	Maize	cytosol	62.07	77.59
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	65.52	77.45
Os03t0321300-01	Rice	cytosol	68.28	77.34
HORVU4Hr1G052070.1	Barley	cytosol	64.83	76.84
TraesCS4B01G177100.1	Wheat	cytosol	64.83	76.01
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	64.6	75.74
Zm00001d043016_P001	Maize	plastid	40.0	68.24
Zm00001d038537_P001	Maize	cytosol	47.36	58.19
Zm00001d043125_P001	Maize	cytosol	45.52	56.57
GSMUA_Achr6P32090_001	Banana	cytosol	44.83	55.24
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	44.83	55.08
VIT_18s0001g05310.t01	Wine grape	cytosol	31.26	45.33
Zm00001d012644_P001	Maize	cytosol	38.39	40.73
Zm00001d043324_P001	Maize	cytosol	36.32	39.4
PGSC0003DMT400024512	Potato	cytosol	30.57	39.12
Zm00001d000314_P001	Maize	cytosol	37.01	39.08
Zm00001d010705_P001	Maize	cytosol	36.78	38.84
Solyc04g072930.1.1	Tomato	cytosol	30.34	38.82
CDY46634	Canola	cytosol	23.22	36.33
CDY26850	Canola	cytosol	24.83	36.24
Bra012314.1-P	Field mustard	cytosol	26.44	36.16
CDX88418	Canola	cytosol	26.67	36.14
CDY21348	Canola	cytosol	26.9	36.11
Bra016384.1-P	Field mustard	cytosol	16.55	36.0
AT1G22220.1	Thale cress	cytosol	25.98	35.99
VIT_06s0009g03690.t01	Wine grape	cytosol	28.28	35.96
CDX87476	Canola	cytosol	26.44	35.83
Bra015630.1-P	Field mustard	cytosol	26.44	35.83
Bra031373.1-P	Field mustard	cytosol	26.67	35.8
VIT_06s0009g03670.t01	Wine grape	cytosol	27.59	35.19
CDY38235	Canola	cytosol	26.21	35.19
AT1G78100.1	Thale cress	cytosol	26.9	35.03
CDY41488	Canola	cytosol	25.52	34.8
CDY00435	Canola	cytosol	25.29	34.59
CDX91668	Canola	cytosol	25.29	34.48
VIT_06s0009g03680.t01	Wine grape	cytosol	16.32	34.13
CDY14629	Canola	cytosol	21.15	33.7
Bra008345.1-P	Field mustard	cytosol	24.37	33.44
PGSC0003DMT400097155	Potato	cytosol	24.6	30.57
CDY32130	Canola	cytosol	15.4	24.72
Zm00001d006500_P001	Maize	cytosol	19.08	20.49

Protein Annotations

EnsemblPlants:Zm00001d047573_P001	EnsemblPlants:Zm00001d047573_T001	EnsemblPlantsGene:Zm00001d047573	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF5	ProteinID:AQL07028.1	SEG:seg
SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI0002210AEF	UniProt:K7VMA3	MapMan:19.2.2.8.1.4.6	:

Description

F-box protein

Coordinates

chr9:+:135979484..135980791

Molecular Weight (calculated)

46013.3 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.041

Length

435 amino acids

Sequence
(BLAST)

001: MDFNKRSVSV SSVVAFISAS ATPSLATTIL FLPQLLPSLP HLRAVSCGKD PSHRQDRMQS KHRVFAEDLL LAAEGEDHFD RVPDSLVLLI FNKVADARSL
101: GRCSAVSRRF NALVPLVDDA CLRIDRVIPA GDGDGDALLG LAGAPRPRAV LSHLLKAVLL AVLKPFAHCD AKSAAAAHKH AQAQAQQQHH SPAQVLKNFS
201: SIRNLRMELP VSDVGTDDGV VLRWKAVFGS TLQSCVILGG TKVDRAAAGP RAPTGADADA EDAGDGGGGG GSIPESFYTN GGLKLRVVWT ISSLIAAATR
301: HYLLREIVKE HPTLEQVALT DANGQGTLSM GREQLKEFRD KPLAAAAAAA NRTQVPACNM KLRYAPLLEL SDGTRIHGAT LVVIRPVGEA TAGTGGGGGR
401: KGLDEFAANA FDGPLREAVA ALSKRRTYLL EMNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.