Factsheet for Solyc04g072930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g008050.2.1
Solyc06g083700.2.1
Solyc09g064160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Solyc06g008050.2.1	AT4G28720.1	21798944
AT1G78100.1	Solyc06g083700.2.1	AT4G28720.1	21798944
AT1G78100.1	Solyc09g064160.2.1	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024512	Potato	cytosol	98.53	98.53
VIT_18s0001g05310.t01	Wine grape	cytosol	49.71	56.33
AT1G78100.1	Thale cress	cytosol	48.82	49.7
CDX88418	Canola	cytosol	44.71	47.35
CDY26850	Canola	cytosol	41.47	47.32
Bra015630.1-P	Field mustard	cytosol	44.41	47.04
CDX87476	Canola	cytosol	44.12	46.73
AT1G22220.1	Thale cress	cytosol	42.94	46.5
Bra016384.1-P	Field mustard	cytosol	26.76	45.5
Bra008345.1-P	Field mustard	cytosol	41.47	44.48
Bra031373.1-P	Field mustard	cytosol	42.35	44.44
CDY41488	Canola	cytosol	41.18	43.89
CDY14629	Canola	cytosol	35.0	43.59
CDX91668	Canola	cytosol	40.59	43.26
Bra012314.1-P	Field mustard	cytosol	40.29	43.08
CDY46634	Canola	cytosol	35.0	42.81
CDY00435	Canola	cytosol	40.0	42.77
CDY21348	Canola	cytosol	40.29	42.28
Solyc02g070480.2.1	Tomato	cytosol	23.82	42.19
CDY38235	Canola	cytosol	40.0	41.98
Zm00001d006501_P001	Maize	cytosol	25.0	38.99
EES19721	Sorghum	cytosol	37.06	35.59
Zm00001d038537_P001	Maize	cytosol	37.06	35.59
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	36.47	35.03
GSMUA_Achr6P32090_001	Banana	cytosol	36.18	34.84
GSMUA_Achr7P21580_001	Banana	cytosol	36.18	34.84
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	35.59	34.77
Os01t0812200-01	Rice	cytosol	35.59	34.28
TraesCS1B01G318500.1	Wheat	cytosol	35.88	34.27
TraesCS1A01G307800.1	Wheat	cytosol	35.88	34.27
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	37.35	34.23
TraesCS3B01G368000.1	Wheat	cytosol	35.59	34.18
TraesCS1D01G307200.1	Wheat	cytosol	35.59	33.99
TraesCS3D01G329900.1	Wheat	cytosol	35.59	33.99
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	36.76	33.97
Os03t0321300-01	Rice	cytosol	38.24	33.85
HORVU1Hr1G068570.1	Barley	cytosol	35.0	33.71
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	35.59	33.7
TraesCS4B01G177100.1	Wheat	cytosol	36.76	33.69
GSMUA_Achr3P18400_001	Banana	cytosol	35.88	33.61
HORVU0Hr1G030450.1	Barley	cytosol	34.71	33.43
GSMUA_Achr10P...	Banana	cytosol	34.71	33.33
EES01639	Sorghum	cytosol	34.71	33.33
HORVU4Hr1G052070.1	Barley	cytosol	35.88	33.24
EER94941	Sorghum	cytosol, peroxisome, plastid	36.76	32.89
TraesCS3D01G518800.1	Wheat	cytosol	30.59	32.81
Zm00001d043125_P001	Maize	cytosol	33.53	32.57
Zm00001d043016_P001	Maize	plastid	24.41	32.55
Zm00001d028957_P001	Maize	cytosol	32.94	32.18
Solyc08g048430.2.1	Tomato	cytosol	29.41	30.67
Zm00001d047573_P001	Maize	plastid	38.82	30.34
CDY32130	Canola	cytosol	23.24	29.15
Os05t0490300-01	Rice	mitochondrion	36.47	27.56
GSMUA_Achr6P15980_001	Banana	mitochondrion	35.0	15.95

Protein Annotations

MapMan:19.2.2.8.1.4.6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506
GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810	UniProt:K4BTT0
PFscan:PS50181	PANTHER:PTHR31215	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc04g072930.1	EnsemblPlants:Solyc04g072930.1.1	UniParc:UPI0002767198
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:59932609..59933631

Molecular Weight (calculated)

37658.0 Da

IEP (calculated)

5.523

GRAVY (calculated)

-0.321

Length

340 amino acids

Sequence
(BLAST)

001: MEFESDNSDG FDRLPDPLIH LMFNQISDIK TLIRCRSVSK RFNSLVPQAD SLLLRVDRVI SATDSDDDDD SFLIAFLRSI IKSIHHLVSP SKVLPTPARS
101: QNSPAQILRE FERIRNLQIE LPSGDLRLEK GTTIRWKADF GKTLKSCVIL GFRSGDGGGG EAEFGGGAGA GLKMRVVWTI SALIAASARH YMMVEVVNEH
201: KELENLVIKD RDDEGKVVMD KKGLRECRES QGEGEEAEVN NASSGNGVGL WWRNNRTTVP AVRMRMWHEA RMELSGGMKM VGATLVVVRP TNGGGERSEV
301: EEQNGDVGLA LGAFGEDAVY CEAVERLLKS RSYILEMNSF

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.