Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21348 | Canola | cytosol | 88.27 | 88.27 |
| Bra031373.1-P | Field mustard | cytosol | 87.04 | 87.04 |
| CDY41488 | Canola | cytosol | 76.23 | 77.43 |
| CDX91668 | Canola | cytosol | 75.0 | 76.18 |
| CDY00435 | Canola | cytosol | 71.3 | 72.64 |
| CDY46634 | Canola | cytosol | 59.57 | 69.42 |
| AT1G22220.1 | Thale cress | cytosol | 61.73 | 63.69 |
| CDY26850 | Canola | cytosol | 52.16 | 56.71 |
| CDY14629 | Canola | cytosol | 47.22 | 56.04 |
| CDX88418 | Canola | cytosol | 54.63 | 55.14 |
| CDX87476 | Canola | cytosol | 54.32 | 54.83 |
| CDY32130 | Canola | cytosol | 40.12 | 47.97 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 43.21 | 46.67 |
| Solyc04g072930.1.1 | Tomato | cytosol | 41.98 | 40.0 |
| PGSC0003DMT400024512 | Potato | cytosol | 41.67 | 39.71 |
| Zm00001d006501_P001 | Maize | cytosol | 23.46 | 34.86 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 36.42 | 33.43 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 36.42 | 33.43 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 36.42 | 33.43 |
| Os01t0812200-01 | Rice | cytosol | 36.11 | 33.14 |
| CDX78848 | Canola | cytosol | 9.88 | 32.99 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 35.8 | 32.58 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 35.8 | 32.58 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 35.49 | 32.49 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 35.49 | 32.3 |
| EES01639 | Sorghum | cytosol | 35.19 | 32.2 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 35.19 | 32.02 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 31.17 | 31.86 |
| GSMUA_Achr10P... | Banana | cytosol | 34.57 | 31.64 |
| EES19721 | Sorghum | cytosol | 34.57 | 31.64 |
| Zm00001d038537_P001 | Maize | cytosol | 34.26 | 31.36 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 34.57 | 31.2 |
| Zm00001d043125_P001 | Maize | cytosol | 33.64 | 31.14 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 33.02 | 30.75 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.33 | 30.51 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 33.95 | 30.3 |
| CDY33458 | Canola | cytosol | 33.33 | 30.0 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 33.95 | 29.65 |
| CDX77641 | Canola | cytosol | 32.72 | 29.28 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 33.02 | 29.16 |
| CDY43956 | Canola | cytosol | 33.33 | 28.95 |
| CDX87738 | Canola | cytosol | 33.33 | 28.95 |
| Os03t0321300-01 | Rice | cytosol | 34.26 | 28.91 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 32.72 | 28.88 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 33.33 | 28.88 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 33.02 | 28.84 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 32.41 | 28.53 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 33.33 | 28.42 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 30.86 | 28.33 |
| Zm00001d028957_P001 | Maize | cytosol | 29.32 | 27.3 |
| Zm00001d047573_P001 | Maize | plastid | 35.19 | 26.21 |
| Zm00001d043016_P001 | Maize | plastid | 20.37 | 25.88 |
| Os05t0490300-01 | Rice | mitochondrion | 35.19 | 25.33 |
| CDX99469 | Canola | nucleus | 16.36 | 23.35 |
| CDX78847 | Canola | cytosol | 15.43 | 21.01 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 33.95 | 14.75 |
Protein Annotations
| EnsemblPlants:CDY38235 | EnsemblPlantsGene:GSBRNA2T00065572001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PFAM:PF00646 | ProteinID:CDY38235 |
| ProteinID:CDY38235.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EDC849 | UniProt:A0A078HIC7 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
BnaC05g17520DBnaC05g17520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIC7]
Coordinates
chrLK032419:-:113590..114564
Molecular Weight (calculated)
35140.2 Da
IEP (calculated)
6.076
GRAVY (calculated)
-0.114
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFDGLPDA IIVDILNKVG DVRTLLRCSS LSKRFNSLVP QSESLILRLD QVGTTESQPD SPVSNIFTSV LKSFHGLCSL FSKPAKPIPI KNLSPNIPSE
101: ILSKFDRVKN LEVELPGGDA SLEKGAAVKW KAEHGESLET LVVFAFRSAS TESSPASASS DGESDAEFVT GLKTRVMWTI SVLMAASKRH FLMSQVVKEH
201: QEMESLVIRD RGGEGTLVMG TEGLRAFRKM EAARGEAAVD ERVEKNRSVV PSVRMSMRHA PSLRLKSGVC LESATLVIVR PSEGYSDVGD DELATEAFAG
301: NCTYGEAVAA LLKCKKNALE MNSF
101: ILSKFDRVKN LEVELPGGDA SLEKGAAVKW KAEHGESLET LVVFAFRSAS TESSPASASS DGESDAEFVT GLKTRVMWTI SVLMAASKRH FLMSQVVKEH
201: QEMESLVIRD RGGEGTLVMG TEGLRAFRKM EAARGEAAVD ERVEKNRSVV PSVRMSMRHA PSLRLKSGVC LESATLVIVR PSEGYSDVGD DELATEAFAG
301: NCTYGEAVAA LLKCKKNALE MNSF
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
Arabidopsis Description
AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.