CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDX97452
CDY06876
CDY13521
CDY14230
CDY16470
CDY35214
CDY39073
CDY40610
CDY40611
CDY72645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	CDX68112	AT1G75950.1	12169662
AT1G78100.1	CDX73212	AT1G75950.1	12169662
AT1G78100.1	CDX80590	AT1G75950.1	12169662
AT1G78100.1	CDX85931	AT1G75950.1	12169662
AT1G78100.1	CDX87650	AT1G75950.1	12169662
AT1G78100.1	CDY13521	AT1G75950.1	12169662
AT1G78100.1	CDY39073	AT1G75950.1	12169662
AT1G78100.1	CDX77280	AT3G60010.1	12169662
AT1G78100.1	CDX93698	AT3G60010.1	12169662
AT1G78100.1	CDX93699	AT3G60010.1	12169662
AT1G78100.1	CDY16470	AT3G60010.1	12169662
AT1G78100.1	CDY40610	AT3G60010.1	12169662
AT1G78100.1	CDY40611	AT3G60010.1	12169662
AT1G78100.1	CDX97452	AT4G28720.1	21798944
AT1G78100.1	CDY06876	AT4G28720.1	21798944
AT1G78100.1	CDY14230	AT4G28720.1	21798944
AT1G78100.1	CDY35214	AT4G28720.1	21798944
AT1G78100.1	CDY72645	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87476	Canola	cytosol	96.26	96.26
Bra015630.1-P	Field mustard	cytosol	94.08	94.08
CDY26850	Canola	cytosol	67.91	73.15
AT1G78100.1	Thale cress	cytosol	75.7	72.75
CDY14629	Canola	cytosol	57.94	68.13
CDX91668	Canola	cytosol	58.26	58.62
CDY41488	Canola	cytosol	57.32	57.68
CDY00435	Canola	cytosol	55.45	55.97
CDY21348	Canola	cytosol	55.76	55.25
CDY38235	Canola	cytosol	55.14	54.63
CDY46634	Canola	cytosol	44.24	51.08
VIT_18s0001g05310.t01	Wine grape	cytosol	45.48	48.67
Solyc04g072930.1.1	Tomato	cytosol	47.35	44.71
PGSC0003DMT400024512	Potato	cytosol	47.35	44.71
CDY32130	Canola	cytosol	32.09	38.01
Zm00001d006501_P001	Maize	cytosol	23.36	34.4
CDX78848	Canola	cytosol	9.97	32.99
TraesCS1A01G307800.1	Wheat	cytosol	35.83	32.3
TraesCS1B01G318500.1	Wheat	cytosol	35.83	32.3
HORVU1Hr1G068570.1	Barley	cytosol	35.51	32.29
HORVU0Hr1G030450.1	Barley	cytosol	35.51	32.29
GSMUA_Achr7P21580_001	Banana	cytosol	35.51	32.29
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	34.89	32.18
TraesCS1D01G307200.1	Wheat	cytosol	35.51	32.02
GSMUA_Achr10P...	Banana	cytosol	35.2	31.92
Zm00001d038537_P001	Maize	cytosol	34.89	31.64
TraesCS3D01G518800.1	Wheat	cytosol	31.15	31.55
Os01t0812200-01	Rice	cytosol	34.58	31.44
TraesCS3B01G368000.1	Wheat	cytosol	34.58	31.36
EES19721	Sorghum	cytosol	34.27	31.07
TraesCS3D01G329900.1	Wheat	cytosol	34.27	30.9
HORVU4Hr1G052070.1	Barley	cytosol	35.2	30.79
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	35.51	30.73
GSMUA_Achr3P18400_001	Banana	cytosol	34.58	30.58
EER94941	Sorghum	cytosol, peroxisome, plastid	36.14	30.53
TraesCS4B01G177100.1	Wheat	cytosol	35.2	30.46
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	33.33	30.23
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	34.58	30.16
CDY33458	Canola	cytosol	33.33	29.72
CDX99890	Canola	cytosol, golgi, nucleus	33.96	29.7
Os03t0321300-01	Rice	cytosol	35.51	29.69
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	33.02	29.53
GSMUA_Achr6P32090_001	Banana	cytosol	32.4	29.46
CDY26286	Canola	cytosol, nucleus, vacuole	34.27	29.41
Zm00001d043125_P001	Maize	cytosol	31.78	29.14
EES01639	Sorghum	cytosol	31.78	28.81
Zm00001d028957_P001	Maize	cytosol	31.15	28.74
CDX77641	Canola	cytosol	32.4	28.73
CDY43956	Canola	cytosol	33.33	28.69
CDX87738	Canola	cytosol	32.4	27.88
Zm00001d043016_P001	Maize	plastid	21.5	27.06
Zm00001d047573_P001	Maize	plastid	36.14	26.67
Os05t0490300-01	Rice	mitochondrion	35.83	25.56
CDX99469	Canola	nucleus	14.64	20.7
CDX78847	Canola	cytosol	12.46	16.81
GSMUA_Achr6P15980_001	Banana	mitochondrion	34.89	15.01

Protein Annotations

EnsemblPlants:CDX88418	EnsemblPlantsGene:GSBRNA2T00147958001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	ProteinID:CDX88418	ProteinID:CDX88418.1
SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EC0135	MapMan:19.2.2.8.1.4.6	:

Description

BnaC06g38620D

Coordinates

chrLK031855:+:909992..911195

Molecular Weight (calculated)

35447.6 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.148

Length

321 amino acids

Sequence
(BLAST)

001: MDAFDAIPNH VVIDILNKVA DVKTLIRCRS VSKRFNSLAA QSDSLLLQLD QIFAAVESEP EVNSPVANFF RSIFKSILPI FSRSAKPAET PKSPAQILAG
101: FNRIRNLDVE LYGGDANLEK GAAVKWKAEF GETLKSSVIV AFRSATVNAS ATESPVNAVE TDSEFVCGLK TRVVWTINAL MAASTRHHLM RDLVKEHKEM
201: ERLTVRDRDE EGTVVMSAAG MKEYREAEAR VDEKGLGLER VRDRTEVPNV RMSMRHAPML KLKSGICLEA ATLVVVRPSG VTSDDNDAEL ATEAFAADCM
301: YGEAVTALLK RRRNVLEMNS F

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.