Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19721 | Sorghum | cytosol | 96.33 | 96.33 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 93.5 | 93.5 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 88.14 | 87.64 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 87.85 | 87.36 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 87.57 | 87.08 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 86.16 | 86.4 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 85.59 | 85.84 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 74.86 | 83.6 |
| Zm00001d043125_P001 | Maize | cytosol | 77.4 | 78.29 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 74.58 | 74.79 |
| GSMUA_Achr10P... | Banana | cytosol | 72.03 | 72.03 |
| Os05t0490300-01 | Rice | mitochondrion | 88.42 | 69.56 |
| Zm00001d006501_P001 | Maize | cytosol | 38.14 | 61.93 |
| Zm00001d028957_P001 | Maize | cytosol | 49.44 | 50.29 |
| Zm00001d043016_P001 | Maize | plastid | 34.75 | 48.24 |
| Zm00001d047573_P001 | Maize | plastid | 58.19 | 47.36 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 38.42 | 45.33 |
| Zm00001d010705_P001 | Maize | cytosol | 46.61 | 40.05 |
| Zm00001d000314_P001 | Maize | cytosol | 46.61 | 40.05 |
| Zm00001d043324_P001 | Maize | cytosol | 45.2 | 39.9 |
| Zm00001d012644_P001 | Maize | cytosol | 45.48 | 39.27 |
| Bra016384.1-P | Field mustard | cytosol | 21.19 | 37.5 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 35.88 | 37.13 |
| Solyc04g072930.1.1 | Tomato | cytosol | 35.59 | 37.06 |
| PGSC0003DMT400024512 | Potato | cytosol | 35.31 | 36.76 |
| CDY46634 | Canola | cytosol | 28.53 | 36.33 |
| AT1G22220.1 | Thale cress | cytosol | 31.92 | 35.99 |
| Bra012314.1-P | Field mustard | cytosol | 31.64 | 35.22 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 20.62 | 35.1 |
| CDY00435 | Canola | cytosol | 31.36 | 34.91 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 33.62 | 34.9 |
| CDX88418 | Canola | cytosol | 31.64 | 34.89 |
| CDY41488 | Canola | cytosol | 31.36 | 34.8 |
| CDX91668 | Canola | cytosol | 31.36 | 34.8 |
| AT1G78100.1 | Thale cress | cytosol | 32.77 | 34.73 |
| CDY21348 | Canola | cytosol | 31.64 | 34.57 |
| Bra031373.1-P | Field mustard | cytosol | 31.64 | 34.57 |
| CDY26850 | Canola | cytosol | 29.1 | 34.56 |
| Bra015630.1-P | Field mustard | cytosol | 31.07 | 34.27 |
| CDX87476 | Canola | cytosol | 31.07 | 34.27 |
| CDY38235 | Canola | cytosol | 31.36 | 34.26 |
| CDY14629 | Canola | cytosol | 25.14 | 32.6 |
| Bra008345.1-P | Field mustard | cytosol | 29.1 | 32.49 |
| PGSC0003DMT400097155 | Potato | cytosol | 30.23 | 30.57 |
| CDY32130 | Canola | cytosol | 19.49 | 25.46 |
| Zm00001d006500_P001 | Maize | cytosol | 23.16 | 20.25 |
Protein Annotations
| EMBL:BT033900 | EMBL:BT036066 | EMBL:BT054305 | EMBL:BT085242 | EnsemblPlants:Zm00001d038537_P001 | EnsemblPlants:Zm00001d038537_T001 |
| EnsemblPlantsGene:Zm00001d038537 | EntrezGene:100191714 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | ProteinID:AQK86879.1 | SUPFAM:SSF81383 | UniParc:UPI00017B6333 | UniProt:B4F9W2 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
F-box protein
Coordinates
chr6:-:159545684..159546748
Molecular Weight (calculated)
39086.3 Da
IEP (calculated)
8.661
GRAVY (calculated)
-0.173
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPKARIHAD PVREVDHFDC LPDSLVLLIL NKVEDVRSLG RCYAVSKRLC GLVPLVHDVY VKIDRVVAVD GDAEDALNLS SPKPRNIFSH FLKLMLFTII
101: KPFHNMRNPN GTGRSLFPQL SHHSPAQVLR NFTHIRNLRI ELPSGDVGTE EGVLLKWRAE YGSTLQSCVI LGGTRVDRKP VGGEHEQSLE DNGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII NDHSTLLSLV LTDADGQGTL CMGAEQLKEF RENQLSASAC SNRTQVPACN MKLKYAPYLE LPGGMALQGA
301: TLVAIKPSPD GSNGSHPNRK EADAFVFGAF DGPFKAAVKA LMKRRTYLLE MNGF
101: KPFHNMRNPN GTGRSLFPQL SHHSPAQVLR NFTHIRNLRI ELPSGDVGTE EGVLLKWRAE YGSTLQSCVI LGGTRVDRKP VGGEHEQSLE DNGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII NDHSTLLSLV LTDADGQGTL CMGAEQLKEF RENQLSASAC SNRTQVPACN MKLKYAPYLE LPGGMALQGA
301: TLVAIKPSPD GSNGSHPNRK EADAFVFGAF DGPFKAAVKA LMKRRTYLLE MNGF
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.