Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00435 | Canola | cytosol | 93.08 | 93.08 |
| Bra016384.1-P | Field mustard | cytosol | 47.48 | 75.5 |
| Bra031373.1-P | Field mustard | cytosol | 74.53 | 73.15 |
| AT1G22220.1 | Thale cress | cytosol | 63.21 | 64.01 |
| Bra015630.1-P | Field mustard | cytosol | 55.03 | 54.52 |
| Bra008345.1-P | Field mustard | cytosol | 52.52 | 52.68 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 43.71 | 46.33 |
| Solyc04g072930.1.1 | Tomato | cytosol | 43.08 | 40.29 |
| PGSC0003DMT400024512 | Potato | cytosol | 42.77 | 40.0 |
| Zm00001d006501_P001 | Maize | cytosol | 25.16 | 36.7 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 37.74 | 33.99 |
| Os01t0812200-01 | Rice | cytosol | 36.48 | 32.86 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 36.48 | 32.86 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 36.48 | 32.86 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 36.16 | 32.49 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 35.53 | 32.47 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 36.16 | 32.3 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 36.16 | 32.3 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 36.16 | 32.3 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 35.85 | 32.02 |
| GSMUA_Achr10P... | Banana | cytosol | 35.53 | 31.92 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 35.85 | 31.75 |
| Zm00001d038537_P001 | Maize | cytosol | 35.22 | 31.64 |
| EES01639 | Sorghum | cytosol | 35.22 | 31.64 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 31.45 | 31.55 |
| EES19721 | Sorghum | cytosol | 34.91 | 31.36 |
| Zm00001d043125_P001 | Maize | cytosol | 33.65 | 30.57 |
| Bra013303.1-P | Field mustard | cytosol | 36.16 | 30.5 |
| Bra022022.1-P | Field mustard | cytosol | 35.53 | 30.46 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 34.59 | 30.3 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.65 | 30.23 |
| Bra025034.1-P | Field mustard | cytosol | 35.22 | 29.95 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 34.91 | 29.92 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 34.28 | 29.7 |
| Os03t0321300-01 | Rice | cytosol | 35.85 | 29.69 |
| Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 34.91 | 29.68 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 35.22 | 29.47 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 34.28 | 29.38 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 33.65 | 29.08 |
| Zm00001d028957_P001 | Maize | cytosol | 31.45 | 28.74 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 31.76 | 28.61 |
| Zm00001d047573_P001 | Maize | plastid | 36.16 | 26.44 |
| Os05t0490300-01 | Rice | mitochondrion | 36.79 | 26.0 |
| Zm00001d043016_P001 | Maize | plastid | 20.75 | 25.88 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 34.91 | 14.88 |
Protein Annotations
| EnsemblPlants:Bra012314.1 | EnsemblPlants:Bra012314.1-P | EnsemblPlantsGene:Bra012314 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR31215 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI000254149D | UniProt:M4D754 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
AT1G22220 (E=1e-105) | F-box family protein
Coordinates
chrA07:-:8593826..8594782
Molecular Weight (calculated)
34890.9 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.157
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFDGLPDA IVVDILNKVG DVKTLHRCSS VCKRFNSLVP QSESLFFRLD QDVTTESRPD SPVSNIFQSL VKSFQGFLSL FSKPAKPIRF TNLSPNIPSK
101: ILSRFDRIKN LEVELPGGDV SLEKGAAVKW KAEFGKTLKT CVVVAFRSAS TVSSSSPGGE SDAIGLETRV VWTISALMAA STRHFLMSEV VKEHKEMESL
201: VMHDVGGEGT VEMGTEGLRE FGNTEEARGG EADERVMKNR RSVVPKVRMS MRHAPSLKLK SGIYLESATL VMVRPSEGYS DVGDDELATE AFAGNCMYGE
301: AVVALLKREK INLEINSF
101: ILSRFDRIKN LEVELPGGDV SLEKGAAVKW KAEFGKTLKT CVVVAFRSAS TVSSSSPGGE SDAIGLETRV VWTISALMAA STRHFLMSEV VKEHKEMESL
201: VMHDVGGEGT VEMGTEGLRE FGNTEEARGG EADERVMKNR RSVVPKVRMS MRHAPSLKLK SGIYLESATL VMVRPSEGYS DVGDDELATE AFAGNCMYGE
301: AVVALLKREK INLEINSF
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
Arabidopsis Description
AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.