Factsheet for HORVU4Hr1G052070.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G001820.1
HORVU2Hr1G116980.1
HORVU5Hr1G050630.3
HORVU5Hr1G125560.2
HORVU7Hr1G007860.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	HORVU2Hr1G001820.1	AT4G28720.1	21798944
AT1G78100.1	HORVU2Hr1G116980.1	AT4G28720.1	21798944
AT1G78100.1	HORVU5Hr1G050630.3	AT4G28720.1	21798944
AT1G78100.1	HORVU5Hr1G125560.2	AT4G28720.1	21798944
AT1G78100.1	HORVU7Hr1G007860.1	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	90.46	90.22
TraesCS4B01G177100.1	Wheat	cytosol	90.46	89.49
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	84.74	83.83
Zm00001d006501_P001	Maize	cytosol	46.87	78.9
Os03t0321300-01	Rice	cytosol	80.93	77.34
EER94941	Sorghum	cytosol, peroxisome, plastid	77.66	75.0
Zm00001d028957_P001	Maize	cytosol	66.76	70.4
Zm00001d047573_P001	Maize	plastid	76.84	64.83
Zm00001d043016_P001	Maize	plastid	43.87	63.14
HORVU1Hr1G068570.1	Barley	cytosol	56.4	58.64
HORVU0Hr1G030450.1	Barley	cytosol	56.4	58.64
GSMUA_Achr6P32090_001	Banana	cytosol	53.68	55.81
VIT_18s0001g05310.t01	Wine grape	cytosol	37.87	46.33
PGSC0003DMT400024512	Potato	cytosol	33.79	36.47
Bra016384.1-P	Field mustard	cytosol	19.62	36.0
Solyc04g072930.1.1	Tomato	cytosol	33.24	35.88
CDY26850	Canola	cytosol	28.88	35.57
VIT_06s0009g03690.t01	Wine grape	cytosol	32.97	35.38
CDX88418	Canola	cytosol	30.79	35.2
HORVU1Hr1G077600.2	Barley	plastid	46.59	35.11
Bra012314.1-P	Field mustard	cytosol	29.7	34.28
Bra015630.1-P	Field mustard	cytosol	29.97	34.27
CDX87476	Canola	cytosol	29.97	34.27
CDY46634	Canola	cytosol	25.89	34.17
VIT_06s0009g03680.t01	Wine grape	cytosol	19.35	34.13
AT1G22220.1	Thale cress	cytosol	29.16	34.08
CDY14629	Canola	cytosol	25.34	34.07
CDY21348	Canola	cytosol	29.97	33.95
AT1G78100.1	Thale cress	cytosol	30.52	33.53
VIT_06s0009g03670.t01	Wine grape	cytosol	31.06	33.43
CDY00435	Canola	cytosol	28.88	33.33
CDY38235	Canola	cytosol	28.88	32.72
Bra031373.1-P	Field mustard	cytosol	28.88	32.72
CDY41488	Canola	cytosol	28.34	32.6
Bra008345.1-P	Field mustard	cytosol	28.07	32.49
CDX91668	Canola	cytosol	28.07	32.29
HORVU3Hr1G075050.2	Barley	plastid	41.69	31.94
PGSC0003DMT400097155	Potato	cytosol	29.7	31.14
CDY32130	Canola	cytosol	19.07	25.83

Protein Annotations

EMBL:AK364482	EnsemblPlants:HORVU4Hr1G052070.1	EnsemblPlantsGene:HORVU4Hr1G052070	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF5
PFAM:PF12937	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002006641	UniProt:F2DKR4	MapMan:19.2.2.8.1.4.6

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKR4]

Coordinates

chrchr4H:+:428981389..428983060

Molecular Weight (calculated)

39528.4 Da

IEP (calculated)

7.415

GRAVY (calculated)

-0.160

Length

367 amino acids

Sequence
(BLAST)

001: MQSRHRVFAE DLLLAQGEDH FDSVPDSLVL LIFNKLADAR SLGRCSAVSR RFNALVPLVD DACLRIDRVI AADDAPAGPR QRGVISGLLK TVLLAVLKPF
101: GHCDAGARPA GHAPAKHAPH HSPAQVLKNF SSIRNLRMEL PVSDVGTDDG VLLKWKAVFG TTLQSCVILG GTRLDHASAS HAPSATAHDD HDAPQSQGQG
201: QGDDDNGSIP ESFYTNGGLK LRVVWTISSL IAAATRHYLL REIVKEHPTL ERVELTDAHG QGTLCMERQQ LKEFTDKPLA AAAAANRTQV PACNMKLRYA
301: PMLELSDGTR IQGATLVVIK PVGEAGGIGG GRKELDEFVA GAFDGPFREA VSMLSKRRTY LLEMNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.