Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 87.06 | 87.77 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 85.18 | 85.18 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 83.83 | 84.74 |
| Zm00001d006501_P001 | Maize | cytosol | 45.82 | 77.98 |
| Os03t0321300-01 | Rice | cytosol | 76.82 | 74.22 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 74.39 | 72.63 |
| Zm00001d028957_P001 | Maize | cytosol | 64.69 | 68.97 |
| Zm00001d047573_P001 | Maize | plastid | 75.74 | 64.6 |
| Zm00001d043016_P001 | Maize | plastid | 42.86 | 62.35 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 55.8 | 58.15 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 55.8 | 57.66 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 51.48 | 54.11 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 36.39 | 45.0 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 41.24 | 38.15 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 43.13 | 38.0 |
| PGSC0003DMT400024512 | Potato | cytosol | 34.5 | 37.65 |
| Solyc04g072930.1.1 | Tomato | cytosol | 34.23 | 37.35 |
| Bra016384.1-P | Field mustard | cytosol | 19.95 | 37.0 |
| CDY26850 | Canola | cytosol | 28.84 | 35.91 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 32.88 | 35.67 |
| CDX88418 | Canola | cytosol | 30.73 | 35.51 |
| AT1G22220.1 | Thale cress | cytosol | 29.92 | 35.35 |
| CDX87476 | Canola | cytosol | 30.46 | 35.2 |
| Bra015630.1-P | Field mustard | cytosol | 30.46 | 35.2 |
| Bra012314.1-P | Field mustard | cytosol | 29.92 | 34.91 |
| CDY46634 | Canola | cytosol | 26.15 | 34.89 |
| CDY14629 | Canola | cytosol | 25.34 | 34.43 |
| CDY21348 | Canola | cytosol | 29.92 | 34.26 |
| CDY00435 | Canola | cytosol | 29.11 | 33.96 |
| CDY38235 | Canola | cytosol | 29.65 | 33.95 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 31.0 | 33.72 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 18.87 | 33.65 |
| CDY41488 | Canola | cytosol | 28.84 | 33.54 |
| Bra031373.1-P | Field mustard | cytosol | 29.11 | 33.33 |
| AT1G78100.1 | Thale cress | cytosol | 29.92 | 33.23 |
| CDX91668 | Canola | cytosol | 28.3 | 32.92 |
| Bra008345.1-P | Field mustard | cytosol | 28.03 | 32.81 |
| PGSC0003DMT400097155 | Potato | cytosol | 29.38 | 31.14 |
| CDY32130 | Canola | cytosol | 19.41 | 26.57 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G127600.1 | EnsemblPlantsGene:TraesCS4A01G127600 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF5 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:164625822..164627247
Molecular Weight (calculated)
39801.8 Da
IEP (calculated)
7.171
GRAVY (calculated)
-0.079
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSRHRVFAE DLLLAQLQGE DHFDSVPDSL VLLIFNKLAD ARSLGRCSAV SRRFNALVPL VDDACLRIDR VIAAADADDA LALPRQRGVL SGLLKTVLLA
101: VLKPFGGHCD AGARPAGHAA AKHAPHHSPA QVLKNFSSIR NLRMELPVSD VGTDDGVLLR WKAVFGTTLQ SCVILGGTRL EHASHPPSAS ASASGAPDEH
201: DASQGDDDNG SIPESFYTNG GLKLRVVWTI SSLIAAATRH YLLREIVKEH PTLERVELTD AHGQGTLCME RPQLKEFTDK PLAAAAAAAN RTQVPACNMK
301: LRYAPMLELS DGTRIQGATL VVIKPVGEAG GIGGGRKELD EFVAGAFDGP FREAVAMLSK RRTYLLEMNG F
101: VLKPFGGHCD AGARPAGHAA AKHAPHHSPA QVLKNFSSIR NLRMELPVSD VGTDDGVLLR WKAVFGTTLQ SCVILGGTRL EHASHPPSAS ASASGAPDEH
201: DASQGDDDNG SIPESFYTNG GLKLRVVWTI SSLIAAATRH YLLREIVKEH PTLERVELTD AHGQGTLCME RPQLKEFTDK PLAAAAAAAN RTQVPACNMK
301: LRYAPMLELS DGTRIQGATL VVIKPVGEAG GIGGGRKELD EFVAGAFDGP FREAVAMLSK RRTYLLEMNG F
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.